Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0304 ATGGATAAACTCATATTCAACTCTTGCATTGCATACTTTCTCCTTTTCTCTCTCTTTGTGCATGGCAAAGACTTATCATGCAATCAAACACCATACCCTCATGTGTGCAACCATTACATTGGCACCACAAATACACTATCAACCCTAGATTCTTCCTCTTTCCATGATATGGCTCTTAAGGTCACCATGGACCAAGCCATTGAAGCACACAAACTTGTATCAACCATGGAATTAAATAATTTCAAAGACAAGAGAGCCAAGTCAGCATGGGAAGATTGTTTAGAGCTTTATGAGGATACAATTTATCAACTCAAACGCTCAATAAACTCAAACAATCTAAATGACAAATTAACTTGGCAAAGTGCTTCCATTACCAATCATCAAACTTGTCAAAATGGTTTCATTGATTTCAACCTTCCCTCTCACTTGAACTACTTCCCATCCATGTTAAGCAACTTCACTAAATTGCTTAGCAATTCCTTGTCCATTAGCAATACTCTAGCTTCATCATATTCGTCCTCGTCCTCGTCCTCGTCCTCATCATCATCATCATCAAGTACTAAACAAAATGGAGGGAGAAGGTTGTTGTCAAATGGATTTCCATATTGGCTTTCAGGTTCAGATAGAAAGCTGCTTCAGGCAACACCAGGGTCGGGGCAAGCGCCAAGAGCTGATATCGTGGTTGCACAAGATGGAAGTGGAAACTATAAGACAATCTCAGAGGGTGTTGTTGCAGCTGCTAAGCTTAGTGGGAAAGGGAGAGTTGTTATTTACGTGAAAGCAGGTGTTTATAGAGAGAATGTTGATATCAAGAAGACAGTGACCAACTTAATGATTTTTGGAGATGGAATGGATTCTACTATCGTAACTGGTAATCAAAACTCTATAGATGGTTCTACTACTTTTCGTTCAGCTACTTTTGCTGTTATGGGAGATGGTTTCATAGCAAAGGACATGACCTTTGAGAACACAGCAGGACCTCAAAAACACCAAGCAGTTGCTCTCCGTTCCGGCGCCGACCACTCTGTTTTTTACCGTTGCGCCTTCAAAGGTTACCAAGACACTTTATACGTTTATGCCAACCGTCAATTTTACCGTGACTGTAACATCTATGGAACAATTGATTTCATTTTCGGTAACGCTGTTACCGTCCTTCAAAACTGCAACATCTTTGTCAGAAAACCAATGAGCAACCAACAGAACACCGTAACAGCACAGGGAAGAACAGATCCAAATGAAAACACAGGAATTGTAATTCATAACTGTCGCATAACCGCCGCAACTGATTTGAAACCGGTTCAGAATTCAGTTAAAACATATCTTGGTAGACCATGGCAGAAATATTCAAGAACTGTTGTTATGAAAAGTAATCTTGATGGTTTGATTAATTCTCAAGGTTGGGCTCCATGGATGGGTGGATTTGCTTTGAATACACTTTACTATGGTGAATATATGAATGTTGGTGCTGGTGCTAATACCGGAGGAAGAGTTAAATGGCCAGGATTTCATGTTATTACCAATCCATCTGAGGCTGTTAAATTTTCAGTTGGTAATTTCTTAGCTGGTGATTCTTGGATTTCTGGTAGTGGTGTGCCGTTTGATGCAGGGTTGTGA 1614 0.4015 MDKLIFNSCIAYFLLFSLFVHGKDLSCNQTPYPHVCNHYIGTTNTLSTLDSSSFHDMALKVTMDQAIEAHKLVSTMELNNFKDKRAKSAWEDCLELYEDTIYQLKRSINSNNLNDKLTWQSASITNHQTCQNGFIDFNLPSHLNYFPSMLSNFTKLLSNSLSISNTLASSYSSSSSSSSSSSSSSSTKQNGGRRLLSNGFPYWLSGSDRKLLQATPGSGQAPRADIVVAQDGSGNYKTISEGVVAAAKLSGKGRVVIYVKAGVYRENVDIKKTVTNLMIFGDGMDSTIVTGNQNSIDGSTTFRSATFAVMGDGFIAKDMTFENTAGPQKHQAVALRSGADHSVFYRCAFKGYQDTLYVYANRQFYRDCNIYGTIDFIFGNAVTVLQNCNIFVRKPMSNQQNTVTAQGRTDPNENTGIVIHNCRITAATDLKPVQNSVKTYLGRPWQKYSRTVVMKSNLDGLINSQGWAPWMGGFALNTLYYGEYMNVGAGANTGGRVKWPGFHVITNPSEAVKFSVGNFLAGDSWISGSGVPFDAGL* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0304 537 ProSitePatterns Pectinesterase signature 2. 370 379 IPR033131 -
Mal5g0304 537 Pfam Plant invertase/pectin methylesterase inhibitor 26 163 IPR006501 GO:0004857
Mal5g0304 537 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 167 IPR035513 -
Mal5g0304 537 TIGRFAM PME_inhib: pectinesterase inhibitor domain 26 167 IPR006501 GO:0004857
Mal5g0304 537 SUPERFAMILY Pectin lyase-like 219 536 IPR011050 -
Mal5g0304 537 SMART complete 259 440 IPR006633 -
Mal5g0304 537 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 170 IPR035513 -
Mal5g0304 537 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 17 536 - -
Mal5g0304 537 ProSitePatterns Pectinesterase signature 1. 251 270 IPR018040 -
Mal5g0304 537 PANTHER PECTINESTERASE 17 536 - -
Mal5g0304 537 MobiDBLite consensus disorder prediction 171 193 - -
Mal5g0304 537 Pfam Pectinesterase 225 523 IPR000070 GO:0030599|GO:0042545
Mal5g0304 537 Gene3D - 220 537 IPR012334 -
Mal5g0304 537 SMART PMEI_2 20 163 IPR006501 GO:0004857
Mal5g0304 537 CDD PMEI-like_3 25 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0304 Mal-Chr5 4984027 4986356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0304 26 537 Carbohydrate Esterase AT1G23200 54.237 0.0 553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0304 5 4984027 4986356 Mal5g0304 5 4984027 4986356 ECH