Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3474 ATGGAGTGGGACAGTAATTCCGATCTAAGCGGCGACGAAGACGACGCCGTTTCATCCTCTTTCCTGTTAAACGACGACGTTGGACCACTTCCTTTCCCTGTTCTTCAAACCGCACCGTGTGGCTTCGTCGTCACCGATGCACTCGATCCTGATCACCCTATTATCTACGTCAACGCTGTTTTTGAGATGCTTACTGGTTATCGCGCCGAAGAAGTTCTCGGTCGTAACTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCAACAGTAATTTCAGAAATTAGAAGATGCATTGATGATGGGGTTGAATTTCAAGGTGAATTGCTGAACTTCAGGAAAGATGGATCTCCACTTATGAACAGACTGCGGCTTACACCTATATATGGAGACGATGATGAAATAACTCATGTCATTGGAATTCAGTTATTCACAGAGGCAAACATTGATCTTGGTCCTGTTCCCGGTTCTACAATAAAGGAATCTGTTAAATCATCTGGTCGGTTTCATTCTGTGCTTTCCTCATTGCAACCTCCTCCACTGGGGGATCGGAATGTGACTCGTGGAATTTGTGGGATATTTCAATTGAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCGCTTAACTCCAAGAGACATTGCATCGGTTAGTTCTGTTTGTACACGATTGTATGAAGTAACAAGAAATGAAGACCTTTGGAGAATGGTATGCCAAAACGCATGGGGTAGTGAAACTACTCGTGTTTTGGAGACTGTTCCTGGTGCAAAGAGGCTTGGATGGGGTCGATTAGCAAGGGAACTGACCACTCTTGAAGCAGCAGCATGGAGTAAACTGACTGTTGGAGGTGGGGTTGAACCCTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGAAACAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAATATGCAACCCATGAATGACACCTTTGTATTGGATCTAAATTCTAATAATCCTGAATGGCAACATGTCCAGGTTAGCTCTCCTCCCCCTGGTCGGTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCGTTTGGTTGTATTTGGAGGCTGTGGAACACAAGGCTTGCTCAATGATGTGTTTGTTCTAGACTTGGATGCAACCCCTCCAACTTGGCGTGAAATATCTGGATTGGCACCTCCACTTCCAAGATCTTGGCATAGCTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCCGGTGGCTGTGCTGATTCTGGAGTACTTTTGAGTGATACTTTCCTCCTTGATATGTCAATGGAAAACCCTGTCTGGAGGGAGATACCAGTGACATGGACACCACCTTCCCGTCTGGGCCACACACTATCTGTTTATGGTGGTAGGAAAATTCTGATGTTTGGGGGTCTGGCCAAGAGTGGCCCCCTGCGTTTCCGGTCAAGTGATGTGTTCACAATGGATTTAAGTGAGGAGGAACCATGTTGGAGATGTGTAACGGGGAGTGGAATGCCTGGTGCTAGCAATCCTGGAGGCATAGCTCCTCCTCCTAGACTTGATCACGTGGCTGTTAGCCTTCCAGGTGGTAGAATTTTGATTTTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCCTCCCAGCTTTACATACTTGATCCAACTGATGAGAAGCCTACATGGAGAATCCTAAATGTACCCGGGCGTCCTCCAAGATTTGCTTGGGGACACAGCACATGTGTTGTTGGAGGGACAAGAGCTATTGTTCTGGGCGGTCAAACTGGGGAGGAATGGATGCTAAGTGATCTGCATGAACTTTCGTTAGCAAATTCTGTCATCTAG 1839 0.4649 MEWDSNSDLSGDEDDAVSSSFLLNDDVGPLPFPVLQTAPCGFVVTDALDPDHPIIYVNAVFEMLTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVISEIRRCIDDGVEFQGELLNFRKDGSPLMNRLRLTPIYGDDDEITHVIGIQLFTEANIDLGPVPGSTIKESVKSSGRFHSVLSSLQPPPLGDRNVTRGICGIFQLSDEVLSLKILARLTPRDIASVSSVCTRLYEVTRNEDLWRMVCQNAWGSETTRVLETVPGAKRLGWGRLARELTTLEAAAWSKLTVGGGVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSNNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGTQGLLNDVFVLDLDATPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDMSMENPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGASNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSDLHELSLANSVI* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3474 612 Pfam PAS domain 39 148 IPR000014 -
Mal4g3474 612 Pfam Galactose oxidase, central domain 296 346 - -
Mal4g3474 612 Gene3D PAS domain 32 160 - -
Mal4g3474 612 ProSiteProfiles PAS repeat profile. 34 109 IPR000014 -
Mal4g3474 612 Pfam F-box-like 208 246 IPR001810 GO:0005515
Mal4g3474 612 SUPERFAMILY PYP-like sensor domain (PAS domain) 38 149 IPR035965 -
Mal4g3474 612 Gene3D - 476 610 IPR015915 GO:0005515
Mal4g3474 612 SMART pac_2 113 154 IPR001610 -
Mal4g3474 612 SUPERFAMILY F-box domain 191 261 IPR036047 GO:0005515
Mal4g3474 612 Coils Coil 605 612 - -
Mal4g3474 612 TIGRFAM sensory_box: PAS domain S-box protein 49 148 IPR000014 -
Mal4g3474 612 CDD PAS 38 148 IPR000014 -
Mal4g3474 612 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 611 - -
Mal4g3474 612 Gene3D - 274 475 IPR015915 GO:0005515
Mal4g3474 612 SUPERFAMILY Kelch motif 283 500 IPR015915 GO:0005515
Mal4g3474 612 PANTHER ADAGIO PROTEIN 1-LIKE 1 611 - -
Mal4g3474 612 Pfam Galactose oxidase, central domain 358 407 - -
Mal4g3474 612 Gene3D - 198 244 - -
Mal4g3474 612 ProSiteProfiles SRCR domain profile. 214 257 IPR001190 GO:0005044|GO:0016020
Mal4g3474 612 Pfam Kelch motif 453 504 IPR011498 GO:0005515
Mal4g3474 612 Pfam Kelch motif 520 567 IPR011498 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3474 Mal-Chr4 102392666 102401411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3474 34 175 AGC Kinase Gene Family AT5G58140 36.301 1.82e-21 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3474 K12115 - gmx:100802828 1170.99