Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal4g2055 | ATGGGCAACCTCTTAGGTAAAAGCAAAAAGCATGAGCCTCAAGATCAAGATTCTAGGAATAATGTTGAAGGAAGAGATGAAAGAATCTCTTCGTCCAATTTTCCAACTCAGAAACCTGTCCCATTACCACTTCCACCACATGCTACTTCCATGCCTAAGAAATCTCCCAAGAAATATGCTTTGATTCAAGATAACTTCACTACTCTTGAACAGGTTATTGTGGCACTGAGGAAAGAAGGTTTAGAGTCATCAAATCTCATCCTTGGAATTGATTTCACAAAAAGTAATGAATGGACTGGCCAAGTTTCATTCAATAAGAGAAGCCTGCATGCAATTAGAGATACACCAAACCCCTATGAGAAGGCCATATCAATTGTTGGCAAGACTTTGGCTCCCTTTGATGAAGACAACTTGATTCCATGCTTTGGCTTTGGTGATGCTACCACACATGATAAAGGAGTATTTAGCTTTCATAGTGATCATTCACCTTGCCATGGCTTTGAGGAAGTTTTGTCTTGCTACAAAAAAATAGTTCCACACTTGAAACTCTCAGGACCAACTTCTTATGGACCGGTGATTGAGGCTGCGATAGACATAGTCGAGAAAAGTCATGGCCAATTCCATGTGTTGGTTATCATTGCAGATGGCCAGGTTACAAAAAGTGTAGATAATGAACTGAGTCCTCAAGAAAAGAAGACAATCAAAGCAATTGCTGATGCAAGTAAATATCCACTTGCTATAGTTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGACATGGAAAAGTTTGATGACACGATTCCAGCACGTGATTTCGATAATTTTCAGTTTGTTAATTTCACGAAAATCATGTCGAAAAACACAAGTCCAAGTGAAAAAGAAGCAGCTTTTGCTCTGTCTGCTCTCATGGAGGTCCCGTTCCAATACAAAGCATGTGTCGAATTTAAAAAACTTGGACGTGTAACAGGAAGAGCAAAGAGAGTAATAACAAAACCATCTCCTGTTCCTTATTCTCGGTCTGCACCAAGCAATTCGACAACATCAACAACAGATGAACAAAATCAATCTGCCTGCCCTGTTTGTCTGACCAATGCAAGGAATTTGGCGTTTGGATGTGGGCACATGACTTGCAGAGATTGTGGATCAAGGTTAAGAGATTGTCCTATATGTCGAGTGAGGATAACTAGTCGTCTTAGAGTTTACAATGGGTGA | 1212 | 0.4043 | MGNLLGKSKKHEPQDQDSRNNVEGRDERISSSNFPTQKPVPLPLPPHATSMPKKSPKKYALIQDNFTTLEQVIVALRKEGLESSNLILGIDFTKSNEWTGQVSFNKRSLHAIRDTPNPYEKAISIVGKTLAPFDEDNLIPCFGFGDATTHDKGVFSFHSDHSPCHGFEEVLSCYKKIVPHLKLSGPTSYGPVIEAAIDIVEKSHGQFHVLVIIADGQVTKSVDNELSPQEKKTIKAIADASKYPLAIVLVGVGDGPWEDMEKFDDTIPARDFDNFQFVNFTKIMSKNTSPSEKEAAFALSALMEVPFQYKACVEFKKLGRVTGRAKRVITKPSPVPYSRSAPSNSTTSTTDEQNQSACPVCLTNARNLAFGCGHMTCRDCGSRLRDCPICRVRITSRLRVYNG* | 404 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal4g2055 | 403 | MobiDBLite | consensus disorder prediction | 336 | 353 | - | - | |
| Mal4g2055 | 403 | SMART | ring_2 | 358 | 390 | IPR001841 | - | |
| Mal4g2055 | 403 | SMART | VWA_4 | 83 | 283 | IPR002035 | - | |
| Mal4g2055 | 403 | Gene3D | von Willebrand factor, type A domain | 90 | 290 | IPR036465 | - | |
| Mal4g2055 | 403 | PANTHER | UBIQUITIN-PROTEIN LIGASE RGLG2-LIKE PROTEIN, PUTATIVE-RELATED | 1 | 402 | - | - | |
| Mal4g2055 | 403 | PANTHER | COPINE FAMILY PROTEIN 1 | 1 | 402 | - | - | |
| Mal4g2055 | 403 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
| Mal4g2055 | 403 | CDD | RING-HC_RGLG_plant | 358 | 401 | IPR045317 | GO:0061630|GO:0070534 | |
| Mal4g2055 | 403 | SUPERFAMILY | vWA-like | 84 | 264 | IPR036465 | - | |
| Mal4g2055 | 403 | MobiDBLite | consensus disorder prediction | 8 | 26 | - | - | |
| Mal4g2055 | 403 | SUPERFAMILY | RING/U-box | 351 | 397 | - | - | |
| Mal4g2055 | 403 | Pfam | Copine | 108 | 319 | IPR010734 | - | |
| Mal4g2055 | 403 | MobiDBLite | consensus disorder prediction | 329 | 353 | - | - | |
| Mal4g2055 | 403 | ProSiteProfiles | Zinc finger RING-type profile. | 358 | 391 | IPR001841 | - | |
| Mal4g2055 | 403 | Pfam | Zinc finger, C3HC4 type (RING finger) | 355 | 396 | - | - | |
| Mal4g2055 | 403 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 338 | 402 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal4g2055 | Mal-Chr4 | 45420346 | 45424882 | Dispersed/Wgd |
Event-related genes