Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1890 ATGGGTGTTAACGAGGATTTCAACATGGATAATGAATATGTAGATGAAGATGTTCCACTTCCTGGATTTCGATTCCATCCTACTGATGAAGAACTTGTTACTTTTTATCTTCGAAGAAAACTTGACAAGAAACCTATTGCTATTGATCTCATCAAACAAATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAATCCAGTGTAACTGCAGCAGAGAAGGAAGGTTACTTTTTTTGCAAAAGAGGGAGAAAATATAGGAACAGCATTAGGCCAAACAGAGTGACTGGATCTGGATTTTGGAAAGCAACAGGAATAGACAAACCAATATACTCAAATGGAGGAGAAGGCAATGATTGTGTTGGACTTAAAAAAACACTTGTTTACTACCGTGGTAGTGCTGGCAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTTTTCCTTCTACTATTGATACCAAAACAAACTTTGCTTATGCTAAGAATGATGCTGATATTGCCCATGAAGCAGAAATTTGGACATTGTGTAGAATTTTCAAAAGAAATGTTTCACAAAGGAAACACCAAATGACAGAGGTAAAACAATTAGCTACCAAACGTCAGGCTATTCATGACAACAGCACCAGAATGAGCAGCAACATTATGGATTTCAACAGGAATCAACAAACATATATCAATTTTGGTGCAAACCATGAACAAAATCAAATTAATGAACAGAAAGCCGTCGATAGCTATACAACAAGCAGTGATCATAGAAATCAGTTTCATGTAGATCAATTGAGCTCTTCAGTGGCACAACCTCAACAAATTAATGTGACACCATCTTCAAATTTTTGGATTAAGCAAGCTGGTAATGAGTTATTATCATTTGATAATTGGGATGAGCTTGGATCAGTTGTGAAGTTTGCTGTTGATTCACCTAGTTTGTAA 936 0.3622 MGVNEDFNMDNEYVDEDVPLPGFRFHPTDEELVTFYLRRKLDKKPIAIDLIKQIDIYKYDPWDLPKSSVTAAEKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSNGGEGNDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRFPSTIDTKTNFAYAKNDADIAHEAEIWTLCRIFKRNVSQRKHQMTEVKQLATKRQAIHDNSTRMSSNIMDFNRNQQTYINFGANHEQNQINEQKAVDSYTTSSDHRNQFHVDQLSSSVAQPQQINVTPSSNFWIKQAGNELLSFDNWDELGSVVKFAVDSPSL* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1890 311 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 309 - -
Mal4g1890 311 SUPERFAMILY NAC domain 10 183 IPR036093 GO:0003677|GO:0006355
Mal4g1890 311 PANTHER TRANSCRIPTION FACTOR JUNGBRUNNEN 1-LIKE 11 309 - -
Mal4g1890 311 Pfam No apical meristem (NAM) protein 21 148 IPR003441 GO:0003677|GO:0006355
Mal4g1890 311 Gene3D NAC domain 28 187 IPR036093 GO:0003677|GO:0006355
Mal4g1890 311 ProSiteProfiles NAC domain profile. 19 183 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1890 Mal-Chr4 36046817 36049068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1890 16 227 NAC Transcription Factor Family AT5G39820 50.439 3.29e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mal4g1890 NAM 8.1e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1890 4 36046817 36049068 Mal4g1890 4 36046817 36049068 ECH