Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1792 ATGGCTACTGTTGTTGCTGCTGCTGACATTTCAGCTGATGCCAACAAAATGGACTCAAAACCAAAAGCTGAATCTGAATTCAGTGTTCAGAAACTTGTTGACATGTTCACAAAGCTGAATCCTTTGGCTAAGGAGTTTTTTCCTTCATCTTATTCTCCTAATCATGATCATGCTCGTCAAGGCTATAATCTCATCACTCCTAACCATTTTCTCCTCAACACTAAGCCTTCTGCTAATGATAATAACTCAAATAATCGAAGGAGGAGAAACAATTTTACCCAAGGGAGGAGAAGGTTGAACGGAAGATCGCTGAAGGCTCAAAGAGAAGATAGCGTTCGAAGAACAGTTTATGTTTCTGATATTGATCAGCATGTTACTGAGGAGCGGCTTGCAGCCTTATTCACCAATTGTGGACAAGTCATTGATTGCCGAATTTGTGGTGATCCGCATTCAGTTCTTCGTTTTGCTTTTGTCGAGTTTTCAGATGAACATGGTGCAAGGGCAGCTTTAAACCTTGGTGGTACTGTGCTTGGATACTATCCAGTGAGGGTCCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGGGAAATGTGTACCAGGACTGTCTATTGTACAAATATTGACAAGAAGATTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCATCTTGTGGCGAGGTTACGCGCTTGAGGCTTTTGGGGGACCAGGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCGGAAAGTGCCATCGTTGCACTAAACTGTAGCGGCATGCTCTTGGGAACTCAGCCTATCAGGGTAAGTCCTTCGAAGACTCCAGTGAGGCCAAGGGTTACTCGTCCAGTATCGCGTTAA 900 0.4344 MATVVAAADISADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHARQGYNLITPNHFLLNTKPSANDNNSNNRRRRNNFTQGRRRLNGRSLKAQREDSVRRTVYVSDIDQHVTEERLAALFTNCGQVIDCRICGDPHSVLRFAFVEFSDEHGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQAEVKNFFESSCGEVTRLRLLGDQVHSTRIAFVEFAMAESAIVALNCSGMLLGTQPIRVSPSKTPVRPRVTRPVSR* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1792 299 SUPERFAMILY RNA-binding domain, RBD 79 190 IPR035979 GO:0003676
Mal4g1792 299 MobiDBLite consensus disorder prediction 73 107 - -
Mal4g1792 299 CDD RRM1_CID8_like 112 191 IPR034823 -
Mal4g1792 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 287 IPR000504 GO:0003723
Mal4g1792 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 178 IPR000504 GO:0003723
Mal4g1792 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 280 IPR000504 GO:0003723
Mal4g1792 299 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 12 298 - -
Mal4g1792 299 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
Mal4g1792 299 Gene3D - 73 190 IPR012677 -
Mal4g1792 299 Gene3D - 199 293 IPR012677 -
Mal4g1792 299 SUPERFAMILY RNA-binding domain, RBD 201 293 IPR035979 GO:0003676
Mal4g1792 299 CDD RRM2_CID8_like 207 288 IPR034825 -
Mal4g1792 299 MobiDBLite consensus disorder prediction 73 89 - -
Mal4g1792 299 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 12 298 - -
Mal4g1792 299 SMART rrm1_1 212 283 IPR000504 GO:0003723
Mal4g1792 299 SMART rrm1_1 115 185 IPR000504 GO:0003723
Mal4g1792 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 189 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1792 Mal-Chr4 33258104 33263399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1792 111 268 Eukaryotic Initiation Factors Gene Family AT1G34140 26.087 4.42e-11 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1792 4 33258104 33263399 Mal4g1792 4 33258104 33263399 ECH