Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0393 ATGATCAAAGGTTTTATGTTTCAACAAGAACAACAACAACAACAACAACAAAAGCAAGTATTAGTTTTTGAGGAAAACATGTCTAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTAATTCCCCAGGCAACAGAACTGAAATTGCTACAAATTATACTCAACAATACTTTGATTCATCTCAAACTCAAACTCATGATGAGACTCCAGCAGTTAAGAAAAGAAGAAACCTTCCTGGCAACCCAGACCCACAAGCTGAAGTTATTGCCTTATCACCAAAGACACTTATGGCAACAAATAGATTCATTTGTGAGATCTGTAACAAAGGATTTCAAAGAGATCAGAATCTTCAACTTCACAAAAGAGGACACAACTTACCATGGAAGTTGAAGCAGAAAACAAGCAATGAGATGAGGAAGAAAGTGTATGTGTGTCCAGAAGCAAATTGTGTGCACCATGACCCATCAAGAGCCTTGGGGGATCTAACTGGTATCAAAAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAGTATGCAGTTCAGTCAGACTGGAAAGCTCACTCCAAAACCTGTGGCACTAGAGAATACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACTCACAGAGCTTTCTGTGATGCATTAGCTGAAGAGAGTTCAAGAACTGTAATTCCTCAACCTGCACAACCAAATTCTCACCACAACATGATCAATCTCCAAACTCAAGATAACCAAGGTTTCCAATTGAAGAAAGAACATCAAAATTTCAACTTGTTAAGGCAAGAACAAGAAATACAAATACCCTCTTGGCTTTGTCAATCCAACATTGACCTATCTTCAAACTATTCAAGAATGGATCAAGATCTAAACCATTATGAAAACCCTAACCCTAGAAATGGTCCCACACTTCCATCATCTGCTGCAGCTTCAACTCACATGTCAGCTACAGCATTGTTACAGAAAGCAGCTCAGATGGGTGCAACAACCAGCTCATCACAGTCCATGATGAGTGGGACCCACCAACAAGGTCACGTGTCTATTGTTGACTCTGCCACCAACAACATGATGATAAACTCAAATGGTTTGAATTTGTCCTCATGTGAAGACCAAATGTTCTCTTCTTCTGGATTTCATGGAACTTCTTTTGAGGATGGAAATATTCTTCATTCAAATCAAGATGATGATAATTATAATCATGAAGGTAATAATGACATTAAAAAAACAACTACCAATGATGATGGTGGTGCCGGTGCCGGTGTCGGTGCCCGAGGAAACAATGCATTTACAAGAGATTTCTTGGGTCTTAGACCACTCTCTGATAGTGATATCCTCACCATTGCTGGTATGGGAAGTTGCATGAACTCTTCTAATTCCCAAAAACCATGGCAAGGTAATTAG 1437 0.3994 MIKGFMFQQEQQQQQQQKQVLVFEENMSNLTSASGEASANSPGNRTEIATNYTQQYFDSSQTQTHDETPAVKKRRNLPGNPDPQAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQKTSNEMRKKVYVCPEANCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESSRTVIPQPAQPNSHHNMINLQTQDNQGFQLKKEHQNFNLLRQEQEIQIPSWLCQSNIDLSSNYSRMDQDLNHYENPNPRNGPTLPSSAAASTHMSATALLQKAAQMGATTSSSQSMMSGTHQQGHVSIVDSATNNMMINSNGLNLSSCEDQMFSSSGFHGTSFEDGNILHSNQDDDNYNHEGNNDIKKTTTNDDGGAGAGVGARGNNAFTRDFLGLRPLSDSDILTIAGMGSCMNSSNSQKPWQGN* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0393 478 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 463 - -
Mal4g0393 478 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Mal4g0393 478 Pfam Zinc-finger double-stranded RNA-binding 101 123 IPR022755 -
Mal4g0393 478 Gene3D Classic Zinc Finger 155 234 - -
Mal4g0393 478 SUPERFAMILY beta-beta-alpha zinc fingers 100 197 IPR036236 -
Mal4g0393 478 MobiDBLite consensus disorder prediction 396 436 - -
Mal4g0393 478 MobiDBLite consensus disorder prediction 301 326 - -
Mal4g0393 478 MobiDBLite consensus disorder prediction 58 83 - -
Mal4g0393 478 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 29 463 - -
Mal4g0393 478 MobiDBLite consensus disorder prediction 401 420 - -
Mal4g0393 478 Gene3D Classic Zinc Finger 80 151 - -
Mal4g0393 478 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 123 IPR013087 -
Mal4g0393 478 SMART c2h2final6 142 172 IPR013087 -
Mal4g0393 478 SMART c2h2final6 177 197 IPR013087 -
Mal4g0393 478 SMART c2h2final6 101 123 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0393 Mal-Chr4 3282309 3285273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0393 23 472 IDZ Gene Family AT1G55110 49.471 2.67e-132 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal4g0393 zf-C2H2_jaz 4.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0393 K25870 - jre:109012370 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0393 4 3282309 3285273 Mal5g0587 5 9275610 9277785 PCT