Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1883 ATGGTTTATACTTCTCTCCCACCATATATGGATCCAGCCAATTGGCACCAACAGCAACCAAATCATCAAGTGGCCAACACTAGTGTCAACACTCCTCTACTTATTCCACCACCACAGCCTCCACCATCGAACCTGACACCATCGCAACCTCATGGAGGCTCGATTAGGCCAGGTTCGATGGCGGATAGGGCAAGGATGGCGAACATACCTATGCAAGAACCATCACAAAAATGTCCAAGGTGTGATTCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGTCTCTCGCAGCCGCGCCACTTCTGCAAGGCTTGTCGAAGGTATTGGACAAGGGGCGGCGCCCTCAGAAGCGTCCCAGTCGGTGGTGGTTGCCGAAGAAATAAGAGGACTAAATCAAACAGCAACAACACCTCCAAGTCTCCGGCTAGCTCCGATCGCCAAACTAGCTCTACAAACAACTCTCCTGCCGTACTCAGTTCCCCGACGCCACCACCGATGAGATTCATGGCTCCTTTGCATCATCTTGGCGATCACCTCGGCGAAATAGGGCTAAACTATGGTTTTTCTAGCCCAATGGGAGGTGTAGGAGACTTAAATTTCCATATCGGAAACTCTTTAGGTGGAGGCGTTGGTAACGGCAGTGTCAATGGTGGTTCTACATCGATTTTACCGGTAGGTGGTTTCGAGCAATGGAGGATGCCACAAACTCACCAATTCCCCTTCTTGTCAACTTTAGAAGCTTCTTCTTCACATGGACTATTGTATCCATTTGAAGGTGGTGGTGCTAATGATCAAGCCCATGTATATGGTGGTGTGTCTAAGGTATTACCAACTAATTCTAGTGTGAAAATGGAAGAGAATCAATCTAGACAATTCTTGGGAATGATCAACAACAACAATAACAATAATAATAATCCTAATAGTGAACAATATTGGAATGCTTCTGCTGGTGGTGGTGCTACTAATTCAGCTTGGATAGATCTTTCTTCAGCTACTACCAATTCCAACTATAGGACATAA 1023 0.4604 MVYTSLPPYMDPANWHQQQPNHQVANTSVNTPLLIPPPQPPPSNLTPSQPHGGSIRPGSMADRARMANIPMQEPSQKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRTKSNSNNTSKSPASSDRQTSSTNNSPAVLSSPTPPPMRFMAPLHHLGDHLGEIGLNYGFSSPMGGVGDLNFHIGNSLGGGVGNGSVNGGSTSILPVGGFEQWRMPQTHQFPFLSTLEASSSHGLLYPFEGGGANDQAHVYGGVSKVLPTNSSVKMEENQSRQFLGMINNNNNNNNNPNSEQYWNASAGGGATNSAWIDLSSATTNSNYRT* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1883 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 8 336 IPR045174 GO:0003700|GO:0006355
Mal3g1883 340 MobiDBLite consensus disorder prediction 28 59 - -
Mal3g1883 340 MobiDBLite consensus disorder prediction 117 169 - -
Mal3g1883 340 MobiDBLite consensus disorder prediction 33 47 - -
Mal3g1883 340 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Mal3g1883 340 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Mal3g1883 340 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 8 336 - -
Mal3g1883 340 MobiDBLite consensus disorder prediction 128 158 - -
Mal3g1883 340 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1883 Mal-Chr3 78448792 78449975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1883 48 331 C2C2-Dof Transcription Factor Family AT3G55370 42.244 5.87e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mal3g1883 zf-Dof 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1883 - - gmx:100796820 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g1883 3 78448792 78449975 Mal3g1883 3 78448792 78449975 ECH
Mal3g1883 3 78448792 78449975 Mal7g0652 7 17480343 17481672 PCT