Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0189 ATGTTGGAGACAAAAGACTCTGCCATCAAACTCTTTGGAAAAACAATTCCTGTTCCGGAGATTCTTGTTGGAGCTTCATATGATGTTGTTGTTGATGAGAGTTTTGATGATCATAATCATGATTCTTCTACAAACTCTTCAAGGGAGTCACACAATAGGGATGCACAAGAGCAAAAGATTGAGAAGGATACGTTGGGAGAAAAACCGTCGGATGAAAAGAACGAAGATGGAATCCCTACACAATCAGCCGAAGAATTCACCAATCCTGATGCAGCCTCTAGAACTGATGAAGAATTTGTTACTGTGTCTACCGAAAGGGAGGCTGCTAGATTGAAAACTTCAAAGACCGAAGAAGAACAGGACGAGACCAGTAATTCAGAAGATAAGAACCTCAAAAAACCGGACAAAATACTTCCGTGTCCGCGGTGTAGTAGCATGGACACCAAGTTTTGCTACTATAATAATTACAACGTAAACCAACCCCGTCACTTCTGCAAAAATTGCCAGAGATATTGGACTGCTGGTGGAACCATGAGAAACGTACCTGTAGGTGCCGGTCGAAGAAAGAACAAGAACTCTTCTTCTCACTATAATCAGATAACTATCTCCGAAGCAACACTCCAGAATTCTCGGATACACCCTTCATTGAAATGCAACAGTACAGTCCTTACATTTGGATCCGATTCACCTTTCTGTGAATCAATGACATCTGTTTTGAAACTTGCTGATAAAACGGTGCAAAGTTACACAAGAAATGGATTTCATAAACATGAAGAACTACGAATCCGCATTCCTCATGCTAGTGAAGAAAAAGGTGGTGATCAATCCAACAAATCTTCGGTTACCTCCACAATGTCGACGGAAGGTGCAACCACCAATGTATCTCAAGAACAAGCTATGCGCAATGGCCAGAGCTTGCCACCACAAGGGGCCTACTTTCCTCATGGAACTCCTATGCCTTTCCCATGGAATCCGGTGCAATGGAGCTCACCGGTTCCACCACCGGCCTTTTTTCCACCGGGAATTTCCATGCCATTTTATCCTGCAACAACTTACTGGGGTTGTACTATGCCAAGTGTATGGAACATTCCACGGCAAGCACAACCATCATCAACGAATGGTGCAAACCCCAACTCTAGTCCAAACTCTCCAACCTTGGGTAAACATTCAAGGGAAGACAGTGTACTCAAATCGAGCGAAGGAGATGGTAGGATAGAAAACAGCGAAGAAAAGAGCTTGTGGTTTCCTAAAACTTTGAGGATCGATGACTCGGGAGAAGTAGAAAAAATCTCTTTCTGGACAACACTTGGGATTAAAAACGACAACGCCGACTCAGTTCCTTCGAGAAGACTCTTTCAGTCATTCCCTTCAAAGTGTGATGAGAAAAATCACTCAGTACAGGCGTCTTCAGTCTTGCAGGCCAATCCGGCGGCGTTGTCTAGGTCACTTAATTTTCATGAGACTTTGTAA 1470 0.434 MLETKDSAIKLFGKTIPVPEILVGASYDVVVDESFDDHNHDSSTNSSRESHNRDAQEQKIEKDTLGEKPSDEKNEDGIPTQSAEEFTNPDAASRTDEEFVTVSTEREAARLKTSKTEEEQDETSNSEDKNLKKPDKILPCPRCSSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSSHYNQITISEATLQNSRIHPSLKCNSTVLTFGSDSPFCESMTSVLKLADKTVQSYTRNGFHKHEELRIRIPHASEEKGGDQSNKSSVTSTMSTEGATTNVSQEQAMRNGQSLPPQGAYFPHGTPMPFPWNPVQWSSPVPPPAFFPPGISMPFYPATTYWGCTMPSVWNIPRQAQPSSTNGANPNSSPNSPTLGKHSREDSVLKSSEGDGRIENSEEKSLWFPKTLRIDDSGEVEKISFWTTLGIKNDNADSVPSRRLFQSFPSKCDEKNHSVQASSVLQANPAALSRSLNFHETL* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0189 489 MobiDBLite consensus disorder prediction 364 389 - -
Mal3g0189 489 MobiDBLite consensus disorder prediction 36 79 - -
Mal3g0189 489 MobiDBLite consensus disorder prediction 364 409 - -
Mal3g0189 489 ProSitePatterns Zinc finger Dof-type signature. 140 176 IPR003851 GO:0003677|GO:0006355
Mal3g0189 489 MobiDBLite consensus disorder prediction 390 409 - -
Mal3g0189 489 PANTHER CYCLIC DOF FACTOR 2 1 487 IPR045174 GO:0003700|GO:0006355
Mal3g0189 489 MobiDBLite consensus disorder prediction 99 135 - -
Mal3g0189 489 MobiDBLite consensus disorder prediction 274 292 - -
Mal3g0189 489 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 487 - -
Mal3g0189 489 ProSiteProfiles Zinc finger Dof-type profile. 138 192 IPR003851 GO:0003677|GO:0006355
Mal3g0189 489 MobiDBLite consensus disorder prediction 264 292 - -
Mal3g0189 489 MobiDBLite consensus disorder prediction 36 135 - -
Mal3g0189 489 Pfam Dof domain, zinc finger 135 192 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0189 Mal-Chr3 6964072 6966857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0189 6 488 C2C2-Dof Transcription Factor Family AT5G39660 41.373 8.23e-98 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mal3g0189 zf-Dof 4.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0189 - - gmx:100784308 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g0189 3 6964072 6966857 Mal2g4235 2 78737156 78740561 ECH
Mal3g0189 3 6964072 6966857 Mal3g0189 3 6964072 6966857 ECH
Mal3g0189 3 6964072 6966857 Mal6g4639 6 130548014 130550547 ECH
Mal6g2118 6 49154117 49156100 Mal3g0189 3 6964072 6966857 ECH