Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4235 ATGATTGAAACTAAGGACCCTGCAATTAAGCTTTTTGGGCAGAAAATTCTCTGTCCAGGGGAAGATGAAGCTCTTATCATTACTAGCCATGAAAATGTTTCGCCGGCTGCGGCGATGGATGTAGAAGAAGAAAGTGATAGATATTTTAGCGAGTCTGAGAATGAAGAAGAAGAAGAAGAAAAAGAAACGAAGAAGGACTCTGAAGCAGATAAAGATGATGAGAAAAAGAAAGAAGCTGATCCTCCCCCAAATGCTGCAGAGACCAAGAACAACAACAATTCACCAGCAACATTACACGAGGGTATTCAGAACCCAAAAACACGTTCCATAGATGAAGAAACTTCAAAATCCGAAAACGAACAAAGTGATACAACAGCAAACAACAACAACACTCAAGAGAAAACACTAAAGAAACCAGACAAATTACTCCCGTGTCCACGCTGTAACAGCGCGGACACAAAATTCTGTTACTACAACAATTATAACATCAATCAGCCGCGCTATTTCTGCAAGGCGTGTCAAAGATATTGGACTGCAGGAGGAACCATGAGGAATGTCCCTGTTGGAGCAGGAAGAAGAAAAAACAAGAACAACTCTTCGTCACATTATCGCCATATCACCATCTCTGAGGCTCTTGATGCTGCCAGAATTATTTCTCCCAATGGAACTCATCATCTTCAAAATTTAAAAAACAATGGTAGAGTCCTCAGCTTTGGATTGGATCATCCACATATATATGATTCAATGTCAAATGATCTCAGTCCTGCAGAGAAAAAGGGTCTTAGCGACACTCGAAATAATGGTGATCATTGCTCAAGTGCATCTTCAATTACAGTTTCGAAATCTATGGATGAAAGTGTCAAAAGAATTTCCCAAGATTCATTACCACAGCAAAATAATGGTTTTCTTCCTCATGTTCCATGTATGACTAGTGTTCCTTGGCCTTATCCTTGGAGTTCTGGCGCAATTCCCTCGCCACAAACTTTGTGTCCTCCGGGATTTCCCATGTCATTTTACCCTGCTCCTTTTTGGAATGTTCCTTGGTTTCCTGCTCATACTTCCACTACAACTCCAACGTCTAGTCCGAAATCTCCAACGCTCGGGAAACACTCGAGGGATGATGACACCAACAACAACGACGAAATTGCTAAACAAGACCATTTGCGAAAAGAAGAATCACCAAAACAAAGAAATGGAGGTGTTTTGGTTCCAAAAACATTGAGAATTGATGATCCAAATGAAGCTGCAAAGAGTTCTATATGGGAAACACTTGGAATTAAGAATGAAGGTGTGAGTAGGGGAGGTATGATTAAGGCTTTTCAATCAAAGAAAGATGGTAAAAACCATGTTAAAACCTCTCCTATGTTGATGGCTAACCCTGCAGCTTTGGCTAGATCACTTAATTTTCATGAGAACTCTTAA 1422 0.4044 MIETKDPAIKLFGQKILCPGEDEALIITSHENVSPAAAMDVEEESDRYFSESENEEEEEEKETKKDSEADKDDEKKKEADPPPNAAETKNNNNSPATLHEGIQNPKTRSIDEETSKSENEQSDTTANNNNTQEKTLKKPDKLLPCPRCNSADTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNNSSSHYRHITISEALDAARIISPNGTHHLQNLKNNGRVLSFGLDHPHIYDSMSNDLSPAEKKGLSDTRNNGDHCSSASSITVSKSMDESVKRISQDSLPQQNNGFLPHVPCMTSVPWPYPWSSGAIPSPQTLCPPGFPMSFYPAPFWNVPWFPAHTSTTTPTSSPKSPTLGKHSRDDDTNNNDEIAKQDHLRKEESPKQRNGGVLVPKTLRIDDPNEAAKSSIWETLGIKNEGVSRGGMIKAFQSKKDGKNHVKTSPMLMANPAALARSLNFHENS* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4235 473 MobiDBLite consensus disorder prediction 105 119 - -
Mal2g4235 473 MobiDBLite consensus disorder prediction 367 396 - -
Mal2g4235 473 MobiDBLite consensus disorder prediction 46 63 - -
Mal2g4235 473 MobiDBLite consensus disorder prediction 85 104 - -
Mal2g4235 473 MobiDBLite consensus disorder prediction 252 284 - -
Mal2g4235 473 Pfam Dof domain, zinc finger 141 197 IPR003851 GO:0003677|GO:0006355
Mal2g4235 473 ProSiteProfiles Zinc finger Dof-type profile. 143 197 IPR003851 GO:0003677|GO:0006355
Mal2g4235 473 MobiDBLite consensus disorder prediction 64 83 - -
Mal2g4235 473 MobiDBLite consensus disorder prediction 29 143 - -
Mal2g4235 473 Coils Coil 38 77 - -
Mal2g4235 473 MobiDBLite consensus disorder prediction 266 284 - -
Mal2g4235 473 PANTHER CYCLIC DOF FACTOR 2 1 472 IPR045174 GO:0003700|GO:0006355
Mal2g4235 473 MobiDBLite consensus disorder prediction 354 408 - -
Mal2g4235 473 ProSitePatterns Zinc finger Dof-type signature. 145 181 IPR003851 GO:0003677|GO:0006355
Mal2g4235 473 PANTHER CYCLIC DOF FACTOR 1 1 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4235 Mal-Chr2 78737156 78740561 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4235 1 471 C2C2-Dof Transcription Factor Family AT3G47500 46.016 5.96e-110 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mal2g4235 zf-Dof 7.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4235 - - gsj:114409713 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g0189 3 6964072 6966857 Mal2g4235 2 78737156 78740561 ECH
Mal6g4639 6 130548014 130550547 Mal2g4235 2 78737156 78740561 ECH
Mal6g2118 6 49154117 49156100 Mal2g4235 2 78737156 78740561 ECH
Mal2g4235 2 78737156 78740561 Mal2g4235 2 78737156 78740561 ECH