Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1220 ATGCAATCAACCAACGGTTCTGATTCGAAACCAACGGAGCAGAGTAATAACAACCGGCCGCAACAGAAAACCCCACCGCCACCATCGCCGCATTCAGTTACACTTCCACCGCCGCAGCCGTGGGTTCCGATGCAATACCCTGCGGCGGCAATGGTAATGCCGCATCATATGTTACCGCCTCAACACTACCCGCCGCCACCGCACCATTACATGCCTTATCATCATTATCATCATCATCAGCCTCACGTGCATCAGAGATCCAGCGATGATAATAAGACTATCTGGGTCGGTGATTTGCACCATTGGATGGATGAAAATTATCTTCACCGTTGTTTCGCTTCCATCGGCGAGATTCTCTCAATTAAGGTTATTCGCAATAAGCAGACTGGTCAAACAGAGGGTTATGGATTTGTGGAATTCCTTTCACATGGGACGGCTGAGAAAGTTTTGCAGACTTATGCTGGCATGTTGATGCCTAACACAGAGCAACCTTTTCGCCTTAACTGGGCGACATTTAGCACAGGAGATCACAAACGCTCAGATAATGTCCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCTTGAAACTTTTTCTGATAAATACCCTTCGGTTAAAGCTGCTAAAGTTGTTTTTGATGCCAATACCGGTCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAGTGAGAGGTCTAAGGCTTTGAATGAAATGAATGGTGTTTTCTGTTCTAGTAGGCCTATGCGAATTGGTGCTGCAACTCCTAGGAAATCCTCTGGCTATCAACAAGGAGGCCAGTCAAATGGCACACCCAGCCAATCTGAAGCTGATTCTACAAATACAACTATATTTGTTGGAGGACTTGACCCTAGTGCTACTGCTGAAGATCTTAGACAACCATTCTCCCAGTACGGTGAGATAGTCTCTGTTAAGATACCTGTCGGAAAAGGATGTGGGTTTGTACAATTTGCCAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGTACAACAGTTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCGGCAAATAAGCAGCAGTTTAGATCAGAATTCGGCAGTCCCTGGAATGGGCCGGCGTATTATGGGGCACCTGCTTATGATGGTTATGGATATGCGATGCCACATCCGCATGACCCAAGCATGTATGCTGCTGCTTATGGGGCTTACCCCATTTATGGAGGACACCAACAGCAAGTAAGCTAA 1272 0.4607 MQSTNGSDSKPTEQSNNNRPQQKTPPPPSPHSVTLPPPQPWVPMQYPAAAMVMPHHMLPPQHYPPPPHHYMPYHHYHHHQPHVHQRSSDDNKTIWVGDLHHWMDENYLHRCFASIGEILSIKVIRNKQTGQTEGYGFVEFLSHGTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDSMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDSERSKALNEMNGVFCSSRPMRIGAATPRKSSGYQQGGQSNGTPSQSEADSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTVGKQTVRLSWGRNPANKQQFRSEFGSPWNGPAYYGAPAYDGYGYAMPHPHDPSMYAAAYGAYPIYGGHQQQVS* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1220 423 MobiDBLite consensus disorder prediction 1 40 - -
Mal2g1220 423 Gene3D - 173 280 IPR012677 -
Mal2g1220 423 MobiDBLite consensus disorder prediction 1 20 - -
Mal2g1220 423 MobiDBLite consensus disorder prediction 21 40 - -
Mal2g1220 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 172 IPR000504 GO:0003723
Mal2g1220 423 SMART rrm1_1 187 261 IPR000504 GO:0003723
Mal2g1220 423 SMART rrm1_1 93 168 IPR000504 GO:0003723
Mal2g1220 423 SMART rrm1_1 292 359 IPR000504 GO:0003723
Mal2g1220 423 Gene3D - 91 171 IPR012677 -
Mal2g1220 423 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 33 422 - -
Mal2g1220 423 CDD RRM3_NGR1_NAM8_like 290 361 - -
Mal2g1220 423 SUPERFAMILY RNA-binding domain, RBD 185 366 IPR035979 GO:0003676
Mal2g1220 423 CDD RRM1_SECp43_like 93 173 - -
Mal2g1220 423 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 33 422 - -
Mal2g1220 423 SUPERFAMILY RNA-binding domain, RBD 52 173 IPR035979 GO:0003676
Mal2g1220 423 Gene3D - 281 394 IPR012677 -
Mal2g1220 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 363 IPR000504 GO:0003723
Mal2g1220 423 CDD RRM2_SECp43_like 185 264 - -
Mal2g1220 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 265 IPR000504 GO:0003723
Mal2g1220 423 MobiDBLite consensus disorder prediction 263 293 - -
Mal2g1220 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 257 IPR000504 GO:0003723
Mal2g1220 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Mal2g1220 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 356 IPR000504 GO:0003723
Mal2g1220 423 MobiDBLite consensus disorder prediction 266 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1220 Mal-Chr2 14330835 14334390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1220 187 370 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 1.65e-20 92.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g1220 2 14330835 14334390 Mal2g1220 2 14330835 14334390 ECH
Mal1g5819 1 135689339 135693418 Mal2g1220 2 14330835 14334390 PCT