LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal2g0523	ATGGAAGTTCAGGAGAGAAAAAAATTGAAGAAGCCTCAACATGCCACCTCCAGAAAAGGTTGTATGAAAGGTAAGGGAGGACCTGAAAATCCGAGTTGCCCTTACAAGGGTGTGAGGCAGAGAACTTGGGGTAAATGGGTTGCTGAAATCCGTGAGCCCAACCGTGGTGCTCGCCTTTGGCTTGGGACATTTGAGACATCCTATGAAGCTGCCTTGGCTTATGATGCCGCCGCCAGTAAGCTTTATGAATCAAGGGCCAAGCTCAATCTACCTGAAATGTTTGTGAAATCTCAAGGTAAAATATCTTCCTCTGACACTCAAATTATTCGAATGGAAGACTCATATCAGCCTCCAATTAATCACAACGCAAATATGGACACATCTTATGACGTCAATACCAACCCATACCCAACAATGTCAATGGCATCTCAACCATTGGACCGCAACAACACCAACTCGCACCCAACCATGTCAATAGCTTCTCAGCCATTAGACTGCAACAACTCCACACCCTCTTTTCCCTTGGATACCAACCCTAACCCAATTGATCAAACCTACAAGGAAATTTTTCCACCTTTGGAAAGAATGAATGATGGTTTTGCAAGTTTAGATGATTCCATATGGCCAGAAGATGTCATGTCAATTGATTTTCCTATTAATTATGCAAATTCTGGAATGATCACAGAGGCAAACTTGACAAATGGAAGTGTTTGGGACTCATTGCAGAAGCAATGGTGCATGTAA	744	0.4301	MEVQERKKLKKPQHATSRKGCMKGKGGPENPSCPYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSYEAALAYDAAASKLYESRAKLNLPEMFVKSQGKISSSDTQIIRMEDSYQPPINHNANMDTSYDVNTNPYPTMSMASQPLDRNNTNSHPTMSIASQPLDCNNSTPSFPLDTNPNPIDQTYKEIFPPLERMNDGFASLDDSIWPEDVMSIDFPINYANSGMITEANLTNGSVWDSLQKQWCM*	248

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal2g0523	247	MobiDBLite	consensus disorder prediction	1	35	-	-
	Mal2g0523	247	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	8	233	-	-
	Mal2g0523	247	Pfam	AP2 domain	35	83	IPR001471	GO:0003700\|GO:0006355
	Mal2g0523	247	ProSiteProfiles	AP2/ERF domain profile.	34	91	IPR001471	GO:0003700\|GO:0006355
	Mal2g0523	247	SMART	rav1_2	34	97	IPR001471	GO:0003700\|GO:0006355
	Mal2g0523	247	Gene3D	AP2/ERF domain	34	92	IPR036955	GO:0003700\|GO:0006355
	Mal2g0523	247	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D	8	233	-	-
	Mal2g0523	247	CDD	AP2	35	92	IPR001471	GO:0003700\|GO:0006355
	Mal2g0523	247	SUPERFAMILY	DNA-binding domain	34	91	IPR016177	GO:0003677
	Mal2g0523	247	PRINTS	Ethylene responsive element binding protein signature	35	46	IPR001471	GO:0003700\|GO:0006355
	Mal2g0523	247	PRINTS	Ethylene responsive element binding protein signature	57	73	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal2g0523	Mal-Chr2	6144489	6145232	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Mal2g0523		AP2	1.5e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal2g0523	2	6144489	6145232	Mal2g0523	2	6144489	6145232	ECH
	Mal1g5967	1	137476194	137477003	Mal2g0523	2	6144489	6145232	PCT