Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0458 ATGGTTACTACCACCGCACCTGATTCTTCTTCTAAACCTGCCGCCACCAATACCCCTAATTTCCCGCGAAAAAACCTTACTTCTCCGTGGGCCCAGGTTGTTCGCGGTGCTGACTCCTCCGAACCACTCAACAACCCATCACCACCGCCGCAGCAGTCTTCTTCATCATCGTCTCTCGATTCAGCCAATTTAGTTGCTGCTATTGCTGCTGCTGCTGTTGTCGTAGATAACAACAACTCCAATGCTGATAAGATTAACAATGCGGGTAATCCTAACCCTAAAAAACCTGCTTGGAAGAATACATCTAATGGCGTTGTTGCTGAAGTGAGTCCTGTAATGGGTGCTGTCTCTTGGCCAGCTTTATCTGCTAAGCCTTCTGCTAAATTGACATCTGATTCCTCCTCCGCCGCCAACAACGGATCAATCTCTGTTCCTCAGGAGCCTGTTACCTCAAATTCCCCTCAGAAACAAGCCACTGCTACTACTTCTAATGCAAGACCTACTCCTCCAATGAATCATAGTGTGGCTAATAGACAAAAACCGATGAAGCGCGGAGGAGGCAACAACAATAGCAATGAGCCTGGTTGTTTGTCGAACAGTTTCTCCAACTCTCCTCAAGCTAATCATCAACCATCGGTTGCTCCACCGTTACCATCTGTTCCTCCACCGTTTCCGGTGCTTCAGATCCCTCCTAATACTACCTTTGCTGATGGGGTTCAGTCTTACAGGAACAACAATGGATGGGGTCCAAGATCTCCAGTTGGGGGTTATGGGCTGCCTGTAGATGAGCACAGGAACCCCTCTCACAGGGGTAATTATGGGCACCGTCCACATAATAATTACGGCATTAGGCGCAATCAGGATCCAGGAAATACAGTAAACACTAGAGACGCTCATGCACCCCAACACAGGATGCACTCGGGGGGATTTTTTAGGCCTACACTACCCAATTCTGCTTCATATTTAGGGGCTCAGCCTATGAGACCATTTATGAACACTGCGGGGTTTCCTGAATTCTATTATTATCCAACAGTACAGTTTGAACCCTTTGGAGGTATGCCATTCTTGACCCATTCACCCCCTCCGGCGATCTTCTTTCCAGTTGCAGAAGAAACTCCCCCGACCAGTACAATACTCAAGCAAATTGAGTATTACTTTAGTGATGTTAATTTGACAAATGATGAATTTCTGAAATCAAACATGGATGAACATGGTTGGGTTCCAATTTCTTTGATTGCCAACTTCCCACGAGTCAAAAAATTGACAAACAACATCGAGTTGATATTGGATTCATTGAGAACTTCGTCAGTTGTGGAAGTGAATGGTGACAAGCTAAGGAAGCGTAATGAGTGGATGAATTTTCTGCCCCCTGCTTTCCAACAGGCTGGTTCGGGTTCAGTATCCTCGAGTGGATCATGTTACAATAACATAGTTGCGGATTTTGATCAGATCACACTGGATGAAGCAACTGAGCATAAAAATTCCATTTCTACCACAAATGAGGACTCTGCAGGAGAGTCTTAG 1524 0.4587 MVTTTAPDSSSKPAATNTPNFPRKNLTSPWAQVVRGADSSEPLNNPSPPPQQSSSSSSLDSANLVAAIAAAAVVVDNNNSNADKINNAGNPNPKKPAWKNTSNGVVAEVSPVMGAVSWPALSAKPSAKLTSDSSSAANNGSISVPQEPVTSNSPQKQATATTSNARPTPPMNHSVANRQKPMKRGGGNNNSNEPGCLSNSFSNSPQANHQPSVAPPLPSVPPPFPVLQIPPNTTFADGVQSYRNNNGWGPRSPVGGYGLPVDEHRNPSHRGNYGHRPHNNYGIRRNQDPGNTVNTRDAHAPQHRMHSGGFFRPTLPNSASYLGAQPMRPFMNTAGFPEFYYYPTVQFEPFGGMPFLTHSPPPAIFFPVAEETPPTSTILKQIEYYFSDVNLTNDEFLKSNMDEHGWVPISLIANFPRVKKLTNNIELILDSLRTSSVVEVNGDKLRKRNEWMNFLPPAFQQAGSGSVSSSGSCYNNIVADFDQITLDEATEHKNSISTTNEDSAGES* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0458 507 Gene3D - 368 454 IPR036388 -
Mal2g0458 507 ProSiteProfiles La-type HTH domain profile. 368 457 IPR006630 -
Mal2g0458 507 SMART la 372 450 IPR006630 -
Mal2g0458 507 Pfam La domain 378 433 IPR006630 -
Mal2g0458 507 MobiDBLite consensus disorder prediction 183 210 - -
Mal2g0458 507 MobiDBLite consensus disorder prediction 1 42 - -
Mal2g0458 507 SUPERFAMILY "Winged helix" DNA-binding domain 365 455 IPR036390 -
Mal2g0458 507 MobiDBLite consensus disorder prediction 124 175 - -
Mal2g0458 507 PRINTS Lupus La protein signature 381 398 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mal2g0458 507 PRINTS Lupus La protein signature 436 449 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mal2g0458 507 MobiDBLite consensus disorder prediction 1 60 - -
Mal2g0458 507 PANTHER LA-RELATED PROTEIN 1B 29 499 - -
Mal2g0458 507 MobiDBLite consensus disorder prediction 123 221 - -
Mal2g0458 507 MobiDBLite consensus disorder prediction 80 102 - -
Mal2g0458 507 MobiDBLite consensus disorder prediction 268 287 - -
Mal2g0458 507 CDD LAM 378 448 - -
Mal2g0458 507 PANTHER LUPUS LA PROTEIN-RELATED 29 499 IPR045180 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0458 Mal-Chr2 5187867 5190431 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g0458 2 5187867 5190431 Mal2g0458 2 5187867 5190431 ECH
Mal1g6126 1 140245908 140250451 Mal2g0458 2 5187867 5190431 PCT