Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g6028 ATGGGTGCTGAAATTCCACAAGATGGATTGAAGAAACTCGAGTATCTTTCACTCGTATCCAAAGTATGTACCGAGTTAGAATCTCACACCGGCACCGGCGACAAAGTTCTCGCCGAATTCATCACCGATTTAGGTCATTCCTCCAACTCCGTCGAAGAATTCGACGCTAAATTGAAGGAAAACGGTGCAGAAATGCCCGATTACTTCGTTAGAACGCTTCTCACTATAATTCATGCAATTCTTCCTCCTAAACCTAAGAAAGAGAAAGATGTTCAGAGCGAGAAGAGTTCTAATTCGAAGACAAAGTTCAAAGCTTTGGCTATTTCAGATGATAGGGATCGTGCTGAGAAGCTGAGAGAAGAGATTGAAATTGAAGCTAGAGAGAAACAGAAGCAATTGGAGCCACCAATGGAAGATGATGATGGTTATAGAGGTAGGGATAGAAGAGATAGACACAGAGATAGATATGATAGAAGGGGGAATGATAGAGATAGGCATGAAAGAGACGATAAAAGGGGGAGTGATAGAGATCGTGGTAGGCGCGGAAGAGATGATACAAGGGGCAATGGTAGAGATAGAGATGTGTATGAAAGAGATGATAAAAGGGGGGATGATAGAGATAGGGATAGGTATGAAAGAGATGATAAAAGGGGGAATGATAGAGATAGGGATAGGGATCGGTATGAGAGACGAAGGAGAGATGAGTATGAGGAGGATGAAGGTGTGAGGGAGGAGAATGGTGGTGATGAGAAAGGGAGGGGAGGAAGAGATACGAGGCGTGGTGGTTCCGGTGAGCCGGAGTTGTATATGGTTTATAAAGGAAGAATTTCGAGGGTGATGGATACAGGGTGTTTTGTTTCGTTGGATGAGTTTAGAGGGAAAGAGGGTTTGGTTCATGTTTCTCAGATGGCTACTAGGAAGATTATGAATGCTAAGGAGGTTGTTAAGAGGGATCAACAGGTTTATGTGAAGGTGATATCGGTTTCTGGTTCGAAGTTGAGTTTGTCTATGAGGGATGTTGATCAGCATAGTGGGAAGGATCTTCTTCCGTTGAAGAAGAGTTCAGAGGAGGAGGCTTTTAGGACGAATCCGCAGGATTCGAAGGATGGGCCGGTGACAAGGACTGGGCTTTCTGGGATTAGGATTGTGGAGGAGGATGATATGGGTTCTTCGCGCAGGCCGTTGAAGAGAATGAGTTCGCCTGAGAGATGGGAAGCGAAACAGTTGATTGCTTCGGGGGTTTTGAGTGTTTCGGAGTATCCGACTTACGATGATGAGGGAGATGGAGTGATGTACCAGGAAGAAGGTGCTGAGGAAGAGCTTGAGATTGAGATGAATGAGGATGAACCTGCTTTCTTGCAAGGACAGAGCAGATACTCAATGGATATGTCTCCTGTTAAGATCTTTAAGAATCCAGAAGGTTCTCTGGGTCGTGCGGCTGCACTCCAGTCTGCGCTTATAAAGGAGCGAAGGGAAGTAAGAGAACAGCAGCAGCGTACCATGCTTGATTCGATTCCAAAGGATCTCAATCGTCCTTGGGAAGATCCCATGCCAGAGTCAGGTGAAAGGCATCTTGCTCAGGAGTTGAGGGGTGTTGGCTTATCGGCCTACGATATGCCAGAATGGAAGAAAGATGCCTATGGAAAAACCATTACTTTTGGGCAAAGGTCAAAGCTTTCTATTCAGGAACAGAGACAGAGTTTGCCAATTTACAAGTTAAAAAAAGAATTGATTCAAGCTGTCCATGATAATCAGGTCTTGGTTGTGATTGGTGAAACTGGTTCGGGTAAGACTACTCAGGTCACACAGTATCTTGCTGAAGCAGGTTACACCACCAGAGGTAAAATTGGATGTACTCAACCCCGTAGGGTGGCTGCAATGTCAGTTGCAAAGAGAGTTGCAGAAGAATTTGGGTGCAGATTAGGAGAGGAAGTTGGTTATGCTATTCGGTTTGAAGATTGCACTGGACCTGATACTGTAATTAAGTACATGACTGATGGTATGCTTCTTAGGGAAATATTGGTGGATGAGAATCTATCACAGTATTCTGTTATAATGCTTGATGAAGCCCACGAGAGAACAATTCATACGGATGTTCTATTCGGACTGCTGAAGCAACTGGTGAAGCGTAGACCCGAGTTGCGATTGATTGTCACATCTGCTACTCTTGATGCTGAAAAGTTTTCAGGATATTTCTTCAACTGTAACATCTTCACAATTCCTGGGAGAACTTTTCCTGTGGAGATACTTTATACGAAACAGCCAGAAAGCGATTACTTGGATGCATCTTTGATCACTGTCCTACAAATTCACTTGACAGAACCTGAAGGAGACATTCTTCTCTTCTTAACTGGTCAGGAGGAGATTGATTTTGCTTGCCAGTCTCTCTATGAGCGAATGAAAGGATTAGGTAAGAATGTTCCAGAGCTGATAATTTTACCTGTTTATAGTGCTCTTCCTAGTGAAATGCAATCTAGGATATTTGATCCTGCTCCTCCCGGAAAACGGAAAGTGGTTGTGGCTACAAACATTGCTGAGGCTTCTTTGACTATTGATGGAATATTTTATGTTATTGATCCGGGGTTTGCTAAGCAAAATGTTTATAACCCAAAGCAAGGTCTTGATTCCTTGGTGATAACTCCGATTTCACAAGCGTCTGCCAAACAAAGAGCTGGACGTGCAGGGCGTACTGGACCTGGAAAGTGTTATCGCCTCTATACTGAGAGTGCATATAGAAATGAGATGTCTCCTACTTCTATTCCAGAGATTCAAAGGATAAATTTGGGTATGACAACTCTTAGCATGAAAGCCATGGGTATAAATGATCTTCTGTCATTTGATTTTATGGATCCACCATCACCTCAAGCACTTATTTCCGCCATGGAGCAGCTTTACAGTCTTGGAGCTTTGGATGAAGAGGGTCTTCTAACCAAATTGGGGAGGAAAATGGCTGAGTTTCCTTTGGATCCGCCACTGTCCAAGATGTTGCTTGCCAGTGTAGACCTTGGGTGCAGTGATGAGATTTTGACCATAATTGCCATGATCCAGACTGGCAATGTATTTTACAGGCCCAGGGAGAAACAAGCCCAAGCAGATCAGAAAAGAGCAAGATTTTTCCAGCCAGAGGGTGACCATCTTACACTGCTTGCTGTTTATGAATCCTGGAAAAATAAAAACTTTTCTGGACCTTGGTGTTTTGAGAACTTTGTTCAATCTCGATCGTTGAGAAGAGCTCAGGATGTAAGGAAACAACTTCTCACCATCATGGATAAGTACAAACTGGATGTTGTGAGCGCTGGAAAAAACTTCACAAAGATTAGGAAGGCTATCACGGCAGGGTTCTTTTTTCATGCAGCAAGAAAGGACCCCCAGGAAGGTTACAGAACACTAGTTGAGAATCAGCCTGTTTATATCCATCCAAGTTCAGCTTTGTTCCAAAGGCAGCCAGACTGGGTCATATACCATGAGCTTGTAATGACAACAAAGGAATATATGCGTGAAGTCACAGTCATAGACCCCAAATGGCTTGTTGAATTGGCTCCAAGATTCTTCAAAGTTGCAGATCCTACAAAGATGAGCAAACGGAAGCGTCAAGAGCGTATTGAACCGCTTTATGATAGATACCACGAGCCAAATTCATGGCGTTTGAGTAAACGCCGTGCATGA 3666 0.4373 MGAEIPQDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITDLGHSSNSVEEFDAKLKENGAEMPDYFVRTLLTIIHAILPPKPKKEKDVQSEKSSNSKTKFKALAISDDRDRAEKLREEIEIEAREKQKQLEPPMEDDDGYRGRDRRDRHRDRYDRRGNDRDRHERDDKRGSDRDRGRRGRDDTRGNGRDRDVYERDDKRGDDRDRDRYERDDKRGNDRDRDRDRYERRRRDEYEEDEGVREENGGDEKGRGGRDTRRGGSGEPELYMVYKGRISRVMDTGCFVSLDEFRGKEGLVHVSQMATRKIMNAKEVVKRDQQVYVKVISVSGSKLSLSMRDVDQHSGKDLLPLKKSSEEEAFRTNPQDSKDGPVTRTGLSGIRIVEEDDMGSSRRPLKRMSSPERWEAKQLIASGVLSVSEYPTYDDEGDGVMYQEEGAEEELEIEMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGMTTLSMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNVFYRPREKQAQADQKRARFFQPEGDHLTLLAVYESWKNKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA* 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g6028 1221 CDD S1_DHX8_helicase 269 345 - -
Mal1g6028 1221 Gene3D - 943 1041 - -
Mal1g6028 1221 MobiDBLite consensus disorder prediction 126 266 - -
Mal1g6028 1221 SMART S1_6 267 338 IPR022967 -
Mal1g6028 1221 Pfam Helicase conserved C-terminal domain 768 898 IPR001650 -
Mal1g6028 1221 SUPERFAMILY Nucleic acid-binding proteins 267 342 IPR012340 -
Mal1g6028 1221 PANTHER ATP-DEPENDENT RNA HELICASE 141 1221 - -
Mal1g6028 1221 SMART ultradead3 566 750 IPR014001 -
Mal1g6028 1221 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 766 939 IPR001650 -
Mal1g6028 1221 MobiDBLite consensus disorder prediction 338 378 - -
Mal1g6028 1221 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 578 741 IPR014001 -
Mal1g6028 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 558 1091 IPR027417 -
Mal1g6028 1221 ProSiteProfiles S1 domain profile. 269 338 IPR003029 GO:0003676
Mal1g6028 1221 Coils Coil 479 499 - -
Mal1g6028 1221 SMART ha2_5 959 1049 IPR007502 GO:0004386
Mal1g6028 1221 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 683 692 IPR002464 -
Mal1g6028 1221 Coils Coil 108 132 - -
Mal1g6028 1221 Gene3D - 744 918 IPR027417 -
Mal1g6028 1221 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1106 1181 IPR011709 -
Mal1g6028 1221 Pfam DEAD/DEAH box helicase 574 724 IPR011545 GO:0003676|GO:0005524
Mal1g6028 1221 PANTHER - 141 1221 - -
Mal1g6028 1221 MobiDBLite consensus disorder prediction 84 108 - -
Mal1g6028 1221 SMART helicmild6 794 898 IPR001650 -
Mal1g6028 1221 CDD SF2_C_RHA 745 906 - -
Mal1g6028 1221 Gene3D - 264 349 IPR012340 -
Mal1g6028 1221 Pfam S1 RNA binding domain 270 331 IPR003029 GO:0003676
Mal1g6028 1221 MobiDBLite consensus disorder prediction 339 364 - -
Mal1g6028 1221 Gene3D - 540 743 IPR027417 -
Mal1g6028 1221 CDD DEXHc_DHX8 563 741 IPR044762 GO:0000398|GO:0003724|GO:0005524
Mal1g6028 1221 MobiDBLite consensus disorder prediction 126 263 - -
Mal1g6028 1221 Pfam Helicase associated domain (HA2) 960 1048 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g6028 Mal-Chr1 138376152 138380712 Dispersed