Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5975 ATGAAGATCCAGTGCGATGTTTGCAACAAAAATGAAGCGTCCTTATTCTGCACCGCCGATGAAGCCGCCTTATGTATAGACTGCGACCACCGTGTCCACCACGCCAACAAACTCGCTTCCAAACACCACCGCCTCTCTCTTCACAACCCAACTCCTAAACAACATCCTCTCTGTGATATTTGTCAGGAGAGAAGAGCTTTTGTGTTATGTAAACAAGATAGAGCGATTCTATGCAAAGATTGTGATTTATCTATTCATTCAGTGAATGAATTTACTCAAAAACATGATAGGTTTCTTCTCACTGGTGTTAAGATTTCAACTACAAATTCTTCTTCTTCATCATCATCAACAACTTCTTCAGCTTTTATCAAGTCAAATCTTGTTCCTTCTTCTTCTTTGATTGAGAAGTCTACTACTCCTTCACCAACATCAAATCTCAACAAAGTAGCTATGGAAGAAGGAAGTGGTGGTTCAACTATTTCTCAATATTTGATTGAGACTTTACCCGGTTGGCAAGTTGATGACTTTCTTGATTCTTCTTCTCTTCCATTTGCTTTCTCCAAGGGTGATGAATTGTTTGATGCTGGTATTGAAGAAAATCTTGATTCATTCTTTCCCAATAATAATTTGGGGATTTGGGTTCCTCAAGCACCACCACCTTCTCTATATTCTTCACAAATAATGATGGGGCAGAGTGAGACAACAAAGAAAGTGAGCAACAACAAAAGTAACATCAACAAATCAAGGTTAAGGGATGATCATGATAGTAATAATTTCACAGTTCCACAGATTAGTCCTGTTGCCAATTCCAAGAGAACAAGATATCTATGGTAG 834 0.3849 MKIQCDVCNKNEASLFCTADEAALCIDCDHRVHHANKLASKHHRLSLHNPTPKQHPLCDICQERRAFVLCKQDRAILCKDCDLSIHSVNEFTQKHDRFLLTGVKISTTNSSSSSSSTTSSAFIKSNLVPSSSLIEKSTTPSPTSNLNKVAMEEGSGGSTISQYLIETLPGWQVDDFLDSSSLPFAFSKGDELFDAGIEENLDSFFPNNNLGIWVPQAPPPSLYSSQIMMGQSETTKKVSNNKSNINKSRLRDDHDSNNFTVPQISPVANSKRTRYLW* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5975 277 MobiDBLite consensus disorder prediction 234 263 - -
Mal1g5975 277 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Mal1g5975 277 MobiDBLite consensus disorder prediction 133 153 - -
Mal1g5975 277 Gene3D Classic Zinc Finger 1 95 - -
Mal1g5975 277 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 275 - -
Mal1g5975 277 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Mal1g5975 277 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 275 - -
Mal1g5975 277 CDD Bbox1_BBX-like 57 100 - -
Mal1g5975 277 SMART bboxneu5 53 100 IPR000315 GO:0008270
Mal1g5975 277 SMART bboxneu5 4 47 IPR000315 GO:0008270
Mal1g5975 277 CDD Bbox1_BBX-like 5 47 - -
Mal1g5975 277 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Mal1g5975 277 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5975 Mal-Chr1 137687874 137689172 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Mal1g5975 zf-B_box 1.4e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5975 1 137687874 137689172 Mal1g5975 1 137687874 137689172 ECH
Mal1g5975 1 137687874 137689172 Mal2g0283 2 3283571 3284819 PCT