Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5973 ATGGCTGGTTTCTTCTCTCTAAGTAGTGGAAGAGGCAAAGAAGAAGCAAGAGAACAAGAAGAAAATAACAACAACAGTGGAAATAGTAATCAGTTTTTGTTCAGAAACGAAGAGATCTACAACAAAGGTTTTGAGATATGGCCACAACAATCTTCTTTTCATCATCATCATCATCAACAACATCAACAAAACATTAACAATTTTTACTCTTTTGGTGTTGGTAGTTCAAGCCGAAGAAACGTCGACGAAAACAACAACGATAATGTTTCAGTTTCATTTTCTGATGAATCAACAAGATTTGGATTAACAGTGATGAGGTCTTCAAGTGGTGGTTTAGGTGGTGGTGGTGGAGGAATGAATTGTCAAGATTGTGGTAATCAAGCTAAGAAAGATTGTCCACATCTTAGATGTAGAACTTGTTGTAAGAGTCGAGGGTTTCAGTGTCAAACTCATGTCAAAAGTACTTGGGTTCCGGCTGCTAAACGCCGCGAACGCCAGCAACAACTTACGTCGTTGCAGCAACATAACCAGCAGCAACAGTTTCACTCATCCAGAAGACACAGAGAAAATGAAACTGATCCTTCAACAGCAGCTACTGGTTCTTTAACTTGTACTCCAGTACCTATCACTACCACAGGGTTGGAGTTGGGGAATTTTCCACCGGAGCTGAATTCACCGGCGGTGTTCCGGTGTGTGAAAGTGAGTGCAATGGATGCACAAGATGAACGTTATGCTTATCAAACAGCTGTGAACATAGGAGGAAGAGTTTTCAAGGGAATTCTGTATGATCAAGGACTTGAAGGTAATTACACTAGTCCAACCGCTGCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTCTTCTGGTGGTGGTGGTGGTAGCGGTGGTGATGGAAATCAACAAAATCTGATAACAACAACCACAAATGTGAGCAATCCATTTGAGTATTCTTCACTATATCCAGCTCCTCTTAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCTCCAAGATCCTAA 1020 0.4216 MAGFFSLSSGRGKEEAREQEENNNNSGNSNQFLFRNEEIYNKGFEIWPQQSSFHHHHHQQHQQNINNFYSFGVGSSSRRNVDENNNDNVSVSFSDESTRFGLTVMRSSSGGLGGGGGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTSLQQHNQQQQFHSSRRHRENETDPSTAATGSLTCTPVPITTTGLELGNFPPELNSPAVFRCVKVSAMDAQDERYAYQTAVNIGGRVFKGILYDQGLEGNYTSPTAAGGGGGGGGGGSSGGGGGSGGDGNQQNLITTTTNVSNPFEYSSLYPAPLNAFMAGTQFFPPPRS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5973 339 MobiDBLite consensus disorder prediction 277 305 - -
Mal1g5973 339 MobiDBLite consensus disorder prediction 164 180 - -
Mal1g5973 339 MobiDBLite consensus disorder prediction 1 31 - -
Mal1g5973 339 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 337 - -
Mal1g5973 339 MobiDBLite consensus disorder prediction 162 204 - -
Mal1g5973 339 Pfam Domain of unknown function (DUF702) 118 267 - -
Mal1g5973 339 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 219 266 IPR006511 -
Mal1g5973 339 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 120 162 IPR006510 -
Mal1g5973 339 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 337 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5973 Mal-Chr1 137617703 137619185 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Mal1g5973 DUF702 6.4e-64 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5973 1 137617703 137619185 Mal7g2600 7 87840945 87841643 ECH
Mal1g5973 1 137617703 137619185 Mal1g5973 1 137617703 137619185 ECH
Mal1g5973 1 137617703 137619185 Mal2g0518 2 6075313 6076745 PCT