Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5972 ATGGATCGCCGTTTCCTCACCGCTCTCTTCCTCTTCGCCGCCGTAGCAACCGCCGTTTCCGACGACACCAACTCCGACGACCTTCTCATCCGTCAAGTTGTCGACACCGCAGAAGATCACCTACTAAACGCAGAGCACCACTTCACAACCTTCAAGTCAAAGTTCAGCAAAAACTACGCAACAAAAGAAGAACACGATTACCGATTCGGCGTGTTCAAATCGAATCTCATCAAAGCTAAGCTTCATCAGAAGCTTGATCCTTCTGCACAACACGGAATCACTAAATTCTCCGATTTAACGGCGTCTGAGTTCCGTCGTCAGTTTCTTGGACTTAACAAACGTCTCCGTTTACCAGCTCACGCTCAGAAGGCTCCGATTCTTCCAACTAACAACCTACCGGAGGATTTTGATTGGCGCGAAAAAGGCGCCGTCACTCCCGTCAAGAATCAGGGTTCTTGCGGTTCGTGTTGGGCGTTTAGTACAACAGGAGCGTTGGAAGGAGCAAATTATTTGGCTACTGGGAAGCTAGTGAGTCTTAGTGAGCAGCAGCTTGTGGATTGTGATCATGTGTGTGATCCAGAGCAATATGGATCGTGTGACTCCGGCTGTAACGGTGGATTAATGAACAACGCGTTTGAATACATACTCCAGTCTGGTGGAGTAGTGGCAGAAAAGGACTATGCTTACACTGGAAGAGATGGCACCTGCAAGTTTGACAAAAGCAAGGTTGTAGCTTCCGTATCTAATTTCAGTGTGGTTTCCCTTGACGAAGACCAGATTGCTGCAAATCTAGTAAAGAATGGCCCTCTTGCAGTTGCTATTAATGCAGCCTGGATGCAGACATATATGAGTGGCGTCTCATGCCCATACATCTGTGCGAAATCACGTTTGGATCATGGGGTTCTTCTAGTTGGTTTTGGCAAAGGTGGTTATGCTCCCATTCGATTGAAGGAAAAGCCTTACTGGATCATAAAGAATTCATGGGGCGAGAATTGGGGAGAGGAAGGATATTACAAGATCTGCAGAGGCCGTAATGTATGTGGTGTTGATTCAATGGTCTCAACTGTTGCTGCAGCTCAATCCTGA 1086 0.4724 MDRRFLTALFLFAAVATAVSDDTNSDDLLIRQVVDTAEDHLLNAEHHFTTFKSKFSKNYATKEEHDYRFGVFKSNLIKAKLHQKLDPSAQHGITKFSDLTASEFRRQFLGLNKRLRLPAHAQKAPILPTNNLPEDFDWREKGAVTPVKNQGSCGSCWAFSTTGALEGANYLATGKLVSLSEQQLVDCDHVCDPEQYGSCDSGCNGGLMNNAFEYILQSGGVVAEKDYAYTGRDGTCKFDKSKVVASVSNFSVVSLDEDQIAANLVKNGPLAVAINAAWMQTYMSGVSCPYICAKSRLDHGVLLVGFGKGGYAPIRLKEKPYWIIKNSWGENWGEEGYYKICRGRNVCGVDSMVSTVAAAQS* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5972 361 PRINTS Papain cysteine protease (C1) family signature 321 327 IPR000668 GO:0006508|GO:0008234
Mal1g5972 361 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Mal1g5972 361 PRINTS Papain cysteine protease (C1) family signature 150 165 IPR000668 GO:0006508|GO:0008234
Mal1g5972 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 321 340 IPR025661 -
Mal1g5972 361 Pfam Cathepsin propeptide inhibitor domain (I29) 48 104 IPR013201 -
Mal1g5972 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
Mal1g5972 361 CDD Peptidase_C1A 133 356 IPR039417 -
Mal1g5972 361 PANTHER CYSTEINE PROTEASE RD19C-RELATED 25 357 - -
Mal1g5972 361 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 357 - -
Mal1g5972 361 Pfam Papain family cysteine protease 132 355 IPR000668 GO:0006508|GO:0008234
Mal1g5972 361 SMART Inhibitor_I29_2 48 104 IPR013201 -
Mal1g5972 361 SMART pept_c1 132 357 IPR000668 GO:0006508|GO:0008234
Mal1g5972 361 SUPERFAMILY Cysteine proteinases 44 355 IPR038765 -
Mal1g5972 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 150 161 IPR000169 -
Mal1g5972 361 Gene3D Cysteine proteinases 18 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5972 Mal-Chr1 137598788 137601313 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5972 1 137598788 137601313 Mal1g5972 1 137598788 137601313 ECH