Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5967 ATGATGAAATCAGGGATGGCAATTGAAGAGAGAAAACAGTTGAAAAGGCCAGCACAAGCAAGTTCAAGAAAAGGGTGTATGAGAGGTAAAGGAGGACCAGAAAATGCAAGTTGCACATACAAAGGTGTGAGACAGAGAACATGGGGAAAATGGGTGGCTGAAATTCGTGAACCTAACCGTGGTGCACGTCTTTGGCTTGGTACTTTTGAAACTTCTCATGAAGCTGCTTTAGCTTATGATGCTGCAGCTCGTAAACTTTATGGTTCTGATGCTAAACTTAACCTCCCTGAACTTTCTGCACCCCCTCAAAATAATTCTACACCCTCTCCTACACCTCAAATGCAACAACAACATCCTCATATTCAAATTCAACCCAACAACAACCACAACAACAATAGTTTCAATATCTCAAATCTCAATTCTTGCAACAACATCAACATGAACAACAACATCAACAACAATAGTCCTGTTTTTGTGTCTCTGTCTTCTCAACAAGTTGGTGATATTACACCAATATATAGCAGTGATAATTCTGTTATGTCATTTCCATTGGATAGTACTATTACAAATACAATGGATACAAAGGGTATGGAGATTAGTACTGATTCATTTTTTGGAACAGTGAATTATGAAACCATGCCAGTGATTGATGATGATTCAATTTGGACAGAAGCTGCTATGTCTTTAGATGCTGCAATTTCAATGGATTTTCCAATGATTGTTGATGATGCTGATGGAATTTATAATTCAGGTGGAAATTTTGCTGAAGTTGGTGCTTGGGATTCTCTGCAAACTCCATGGTGCATGTAA 810 0.3827 MMKSGMAIEERKQLKRPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSDAKLNLPELSAPPQNNSTPSPTPQMQQQHPHIQIQPNNNHNNNSFNISNLNSCNNINMNNNINNNSPVFVSLSSQQVGDITPIYSSDNSVMSFPLDSTITNTMDTKGMEISTDSFFGTVNYETMPVIDDDSIWTEAAMSLDAAISMDFPMIVDDADGIYNSGGNFAEVGAWDSLQTPWCM* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5967 269 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Mal1g5967 269 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Mal1g5967 269 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 14 251 - -
Mal1g5967 269 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Mal1g5967 269 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Mal1g5967 269 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Mal1g5967 269 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Mal1g5967 269 MobiDBLite consensus disorder prediction 1 38 - -
Mal1g5967 269 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Mal1g5967 269 MobiDBLite consensus disorder prediction 1 17 - -
Mal1g5967 269 MobiDBLite consensus disorder prediction 94 117 - -
Mal1g5967 269 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 251 - -
Mal1g5967 269 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5967 Mal-Chr1 137476194 137477003 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal1g5967 AP2 8.9e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5967 1 137476194 137477003 Mal1g5967 1 137476194 137477003 ECH
Mal1g5967 1 137476194 137477003 Mal2g0523 2 6144489 6145232 PCT