Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5961 ATGTATCCGAACCAAGCGTTTTCTTCGGGATCTTACGCGGAGATGATTTCTGGGAATACTTTGTTGCCTCATAACTACAGTGAATCTGTAGGAGGACAAAATGAGTTGAAGTTTATGACATCTATGGATGACACAATGAATATGCTGTCTATTGATCAGGGGCATTCCAATGCTACTACGAGCGATCCAAGGACACAATTCGGACTCGTTGAGAGCGAGCAAAATGTACAATGCCAAGGCCTGTCTCTTAGCCTTGGGACAATGATGCCTTCCTTTCAATATCAGTATCCTAGCAACGGTTTCACCTCGCTAATGAATGCTCAAATTTCAAACTTAAAGGGGTCTGCATCTCTTAAAGATGATGAGGCTGAGTGCATGGCATCTTTGTCTTCGGGAGGATTTAACAACAATGTCAAAAGGGAGGGTTTGTATAATCTAAACCCCTCAATAGGCCTTAATGAAGGCCAATCTGATCCGTGCCTGCAAGGATCATCGGTTATTCCGAACAATGTCCTTAACTCTCATTACCTTAAGGCAGCACAAGAATTGCTAGATGAAATAGTTAATGTCCGAAAGGGCTTGAAACAAACCGGATTGGAAAAACAACAAAGTTTACGCGATGCTGGTTTAGACGGTTCCAAAGATTCTGATGGAAAATCTACAAGTCAATCTATGCAAATATCTTCAGGCCCTAATGGTTCTAACGCAAACAACTCTTCATGTGAGCTATCACCTGCCGAACGACAGCATTTATTGGACAAGAAAACAAAACTGTTGTCCATGTTGGATGAGTTAGACAAAAGATACCGACAATACTGTCATCAAATGCAGATTGTTGTGTCATCTTTTGACATGGTTGCTGGTTGTGGCGCAGCTGAACCATACACTGCTCTTGCTTTGCGCACCATTTCTCGTCACTTTCGCTGTTTGCGTGATGCTATTAGCGGCCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTCCGCTATGTCGATCAGCAGCTTAGACAACAAAAAGCTCTTCAGCAGCTTGGTGTAATGAGACAAGCTTGGAGACCTCAGAGAGGACTTCCTGAAAGCTCTGTGTCAATACTCCGTGCGTGGCTCTTCGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATCATGTTGGCAAGACAAACAGGCTTGACCAGAAACCAGGTGGCGAATTGGTTCATTAATGCGAGGGTGCGTCTTTGGAAACCAATGGTCGAAGAAATGTACAAAGAAGAGTTTGGTGATTCGGAGACAAGCAGTAATCTTTTATCAGAGAATAACACGCCGAAAACTCTGAGAGACGATGATGTTCGGGTGTGGGATGATAAAAGGGAAGAGTCTCATGACAAGTTAATGAATGTTGATGGTGTTCAACAACAAGGTCAAATTGAAGGGTTGAAGTTAGATCATGCATCCTCCTCCACCACAGAATTGGATAGAGGGATTCAAAGTAGTGATCATTGGACAAATATGATGGATTCTAGACTTGGGAAACTGCAGGGTGACCAACAAAGGTTTAACATGAATAATAGTCCTTATTCAAATGCACCTATCTCAATCAACCAAAATGGTGATGGTTGCATTATGGATTCTACTCCTACTACCTATGATGATTTATCAGAGTTGAGTAACTTCGGTGTTGGTGGCCATGTTTCACTTGCATTGGAGTTGAGGAACTCTGAAAGTGATGGATTTGGTTTGTCCAATGATGACATCAATAAAAGGCGTAGTAATCAAACAATGGCTTCTTCACCAGATACTGATTTGTTAGATTATCACTTCACAGACACTGGAAAGCAACAACACAAGTTTGGCAACCCTCATTTGTTACATGAGTTTGTTGTCTGA 1890 0.4217 MYPNQAFSSGSYAEMISGNTLLPHNYSESVGGQNELKFMTSMDDTMNMLSIDQGHSNATTSDPRTQFGLVESEQNVQCQGLSLSLGTMMPSFQYQYPSNGFTSLMNAQISNLKGSASLKDDEAECMASLSSGGFNNNVKREGLYNLNPSIGLNEGQSDPCLQGSSVIPNNVLNSHYLKAAQELLDEIVNVRKGLKQTGLEKQQSLRDAGLDGSKDSDGKSTSQSMQISSGPNGSNANNSSCELSPAERQHLLDKKTKLLSMLDELDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSETSSNLLSENNTPKTLRDDDVRVWDDKREESHDKLMNVDGVQQQGQIEGLKLDHASSSTTELDRGIQSSDHWTNMMDSRLGKLQGDQQRFNMNNSPYSNAPISINQNGDGCIMDSTPTTYDDLSELSNFGVGGHVSLALELRNSESDGFGLSNDDINKRRSNQTMASSPDTDLLDYHFTDTGKQQHKFGNPHLLHEFVV* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5961 629 Pfam Homeobox KN domain 374 413 IPR008422 GO:0003677|GO:0006355
Mal1g5961 629 SMART HOX_1 357 421 IPR001356 GO:0003677
Mal1g5961 629 CDD homeodomain 357 418 IPR001356 GO:0003677
Mal1g5961 629 MobiDBLite consensus disorder prediction 578 598 - -
Mal1g5961 629 Pfam Associated with HOX 171 315 IPR006563 -
Mal1g5961 629 SUPERFAMILY Homeodomain-like 358 424 IPR009057 -
Mal1g5961 629 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 591 - -
Mal1g5961 629 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 28 591 - -
Mal1g5961 629 MobiDBLite consensus disorder prediction 201 243 - -
Mal1g5961 629 MobiDBLite consensus disorder prediction 427 447 - -
Mal1g5961 629 MobiDBLite consensus disorder prediction 215 243 - -
Mal1g5961 629 ProSiteProfiles 'Homeobox' domain profile. 354 417 IPR001356 GO:0003677
Mal1g5961 629 SMART prehox3 164 316 IPR006563 -
Mal1g5961 629 Coils Coil 177 197 - -
Mal1g5961 629 Gene3D - 354 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5961 Mal-Chr1 137414624 137417553 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Mal1g5961 POX 3.7e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5961 1 137414624 137417553 Mal1g5961 1 137414624 137417553 ECH
Mal1g5961 1 137414624 137417553 Mal2g0531 2 6221333 6223780 PCT
Mal2g0530 2 6214734 6216919 Mal1g5961 1 137414624 137417553 PCT