Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal1g5949 | ATGGGTTCAGCATGTTGTGTTCCTGTAAAGAATCGCAGTGTTAACAGTACTGGAGGTGAGAGTTTGCAAAGAGATGTAACACGATCACGGTCATTGAGCTTTCGACGGGATAGTCGAGGGCGTTCGATGAAGTCCTCTGTCGATGAGGCATTGGCTGAAAATATAATGACACCATCTTCAGATCTGTCAATGTCAAGCTATTTTTCAACAGTGGTGAAGGATCCAGGAGAGTCTTCCATACCAAATCATTCACTTTCATTACCTTCAGTTTTCCCAACACCTATAGCAGGTCCTTCATCTAGTCAAGATTATCATCATCACCCTAACTCTACCCCAACAAGATGGGCGCATCGATCTTTGGGACACCCACTGTTGAGACAGATTTCTGATAATCAAGTCATTGATATTAAATCACCAGACAGCTCAATTTTTGAAGGAAGGGCATCATTTGTACTCTCCGCTTGCAGCAATGAAATTGAAGCTGGATCCCAACGTGGATCGTCTGATCGCTGGTCGATACACACTTTTTCTGAGCTGGTGTCCTCCTCACAAAGAGGAAGGTGGTCTTTTGACAGTGAGTGTTTTGGCTCGGGTCGTCGCAAGATAAGTAGATCCAGTAGCAGATTGTCAAATTCATCTTCCATGGATCTACAATCTTGTGGGATTTGCACAAGGCCTTTGTGTGACAAATCAGCAGGGAACCAGAAGTTTATTGCCAACATTGACCTCTCATCTGTTGCTGTACTAGCATGCAAGCATGTTTTTCATGGTGAATGCTTAGAGACTATGACTGATGAGGCAGATAAGTATGATCCACCGTGTCCAATTTGTAAGGGTTCCAGAAAAAGTTTATGGGCTGAAGCAGAGATGAAGGCCAAGAACCTCAAGATATCCAGAAAGCGTGTTGTTGATAGCTATCTTGATGGTGGTTCTGATGTTTTTGATCGCCAAGAAGATAATGAATTGCGAGGAAAGGTTTCAAAGAGTGAGGCTAGCTCCAGTACGAGGAGCTCTGTTGGAAAGCCTTCTTTGAGGAAGCACTTTTCACTAGGGTCAAAGTGGAAGCGATCTCTGTCTGAGAATGATTCTCCCAGGAAAGGCTTTTGGCCTAGATATAGAAAAGATTGA | 1128 | 0.4371 | MGSACCVPVKNRSVNSTGGESLQRDVTRSRSLSFRRDSRGRSMKSSVDEALAENIMTPSSDLSMSSYFSTVVKDPGESSIPNHSLSLPSVFPTPIAGPSSSQDYHHHPNSTPTRWAHRSLGHPLLRQISDNQVIDIKSPDSSIFEGRASFVLSACSNEIEAGSQRGSSDRWSIHTFSELVSSSQRGRWSFDSECFGSGRRKISRSSSRLSNSSSMDLQSCGICTRPLCDKSAGNQKFIANIDLSSVAVLACKHVFHGECLETMTDEADKYDPPCPICKGSRKSLWAEAEMKAKNLKISRKRVVDSYLDGGSDVFDRQEDNELRGKVSKSEASSSTRSSVGKPSLRKHFSLGSKWKRSLSENDSPRKGFWPRYRKD* | 376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal1g5949 | 375 | SUPERFAMILY | RING/U-box | 219 | 280 | - | - | |
| Mal1g5949 | 375 | SMART | ring_2 | 220 | 277 | IPR001841 | - | |
| Mal1g5949 | 375 | PANTHER | C3HC4-TYPE RING ZINC FINGER PROTEIN | 42 | 369 | - | - | |
| Mal1g5949 | 375 | PANTHER | C3HC4-TYPE RING ZINC FINGER PROTEIN | 1 | 41 | - | - | |
| Mal1g5949 | 375 | MobiDBLite | consensus disorder prediction | 327 | 342 | - | - | |
| Mal1g5949 | 375 | Pfam | Ring finger domain | 219 | 278 | IPR001841 | - | |
| Mal1g5949 | 375 | MobiDBLite | consensus disorder prediction | 96 | 115 | - | - | |
| Mal1g5949 | 375 | PANTHER | EXPRESSED PROTEIN | 42 | 369 | - | - | |
| Mal1g5949 | 375 | PANTHER | EXPRESSED PROTEIN | 1 | 41 | - | - | |
| Mal1g5949 | 375 | MobiDBLite | consensus disorder prediction | 29 | 46 | - | - | |
| Mal1g5949 | 375 | MobiDBLite | consensus disorder prediction | 318 | 375 | - | - | |
| Mal1g5949 | 375 | ProSiteProfiles | Zinc finger RING-type profile. | 220 | 278 | IPR001841 | - | |
| Mal1g5949 | 375 | MobiDBLite | consensus disorder prediction | 11 | 47 | - | - | |
| Mal1g5949 | 375 | MobiDBLite | consensus disorder prediction | 358 | 375 | - | - | |
| Mal1g5949 | 375 | MobiDBLite | consensus disorder prediction | 11 | 28 | - | - | |
| Mal1g5949 | 375 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 200 | 280 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal1g5949 | Mal-Chr1 | 137344390 | 137346528 | Dispersed/Wgd |
Event-related genes