Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5868 ATGGGTTGGCTTAGTAGAATTTTTAAAGGGTCTGATCATAAGGTTTCAGAAGGGCATTACTATAAAGACGATTCGAGTTATTACTTGCCATCAACTTCAGGGGATGTTTGGACTGAGAACGAGAATAATGAAGATATAGATCGTGCTATTGCGTTGTCTCTGGTAGAAGAAAATCAGAAAGTGAAGAATGTAAAAGACCACAAATCACAATTAGAAGAAGATGAGCAACTTGCCAGAGCTATAGAAGAAAGCCTAAATTTGGAGTCACCTCCCAAACATGGAAATGATAATATGTATCAACCAATTCAGTATTTCCCGATGGGGTACAGGATATGTGCTGGCTGCAATACTGAGATTGGTTATGGACGATATCTAAATTGCTTGAGTGCATTTTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTACGAGTTTTCCACGTCTGGAAATTACCCTTACCATAAAGCATGCTATAAGGAAAGCTACCATCCGAAATGTGATGTCTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACACCCATTCTGGAACCAGCATTATTGCCCTTCACATGAACATGATAATACTCCTCGCTGTTGTAGCTGTGAGCGAATGGAGTCACAAGGGATGGGATATATTGCCCTTAAGGATGGAAGGAAGCTCTGCTTAGAGTGTCTTGATTCTGCTATCATGGATACTAACGAATGCCAGCCCCTTCATGCTGATATACTAAAGTTCTATGAAAGCATAAATATGAGACTGGATCAGCAAGTTCCTCTACTGTTGGTTGAAAGACAAGCACTGAATGAAGCAAGGGAGGGAGAAAAGAATGGCCACTATCATATGCCTGAGACCAGAGGACTCTGCCTCTCAGAGGAACTCAGCGCTATTTCGAGACGACCTAGACTCGGGACAGGAAATAAAGCAATAGACATGAGAGCACAGCAACACAAACTGACTTCACGCTGTGATGTGACAGCAATTCTCATTCTATATGGACTTCCAAGGCTACTTACCGGATCAATTCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTATCAGGTTTTCGGACTCTACGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCACATGTGGTTGGAGTCTGAGCTTTCTTCTGCATCAGGAAGCAACTTTGTATCAACCTCATCCTCCTCTGCATCATATACATCTAAGAAAGGTAAAAGGCCTCCTTTTGAGAAGAAGCTTGGGGAGTTCTTCAAGCACCAGGTTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGGGCCGGTCAAAAAGCAGTTCGCAAGTATGGCCTACAAAGGACCCTTCATCATATGAAGATGACAGGGAGTTTCCCCTATGAATGA 1422 0.4311 MGWLSRIFKGSDHKVSEGHYYKDDSSYYLPSTSGDVWTENENNEDIDRAIALSLVEENQKVKNVKDHKSQLEEDEQLARAIEESLNLESPPKHGNDNMYQPIQYFPMGYRICAGCNTEIGYGRYLNCLSAFWHPECFRCRACNLPISDYEFSTSGNYPYHKACYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWNQHYCPSHEHDNTPRCCSCERMESQGMGYIALKDGRKLCLECLDSAIMDTNECQPLHADILKFYESINMRLDQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSAISRRPRLGTGNKAIDMRAQQHKLTSRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLSGFRTLRQDVEEGICQVLAHMWLESELSSASGSNFVSTSSSSASYTSKKGKRPPFEKKLGEFFKHQVESDISPVYGDGFRAGQKAVRKYGLQRTLHHMKMTGSFPYE* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5868 473 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 41 60 IPR003903 -
Mal1g5868 473 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 72 91 IPR003903 -
Mal1g5868 473 ProSiteProfiles LIM domain profile. 110 170 IPR001781 -
Mal1g5868 473 SMART lim_4 111 163 IPR001781 -
Mal1g5868 473 Pfam Protein DA1 262 467 IPR022087 -
Mal1g5868 473 ProSitePatterns LIM zinc-binding domain signature. 112 146 IPR001781 -
Mal1g5868 473 Gene3D Cysteine Rich Protein 108 171 - -
Mal1g5868 473 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 105 137 - -
Mal1g5868 473 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 200 - -
Mal1g5868 473 CDD LIM_DA1 112 164 - -
Mal1g5868 473 Pfam LIM domain 112 166 IPR001781 -
Mal1g5868 473 Coils Coil 54 84 - -
Mal1g5868 473 PANTHER PROTEIN DA1-LIKE 1 472 - -
Mal1g5868 473 SMART uim 41 60 IPR003903 -
Mal1g5868 473 SMART uim 72 91 IPR003903 -
Mal1g5868 473 MobiDBLite consensus disorder prediction 397 419 - -
Mal1g5868 473 PANTHER PROTEIN DA1-RELATED 2 1 472 IPR045218 -
Mal1g5868 473 MobiDBLite consensus disorder prediction 397 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5868 Mal-Chr1 136312118 136317527 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal1g5868 DA1-like 1.3e-93 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5868 1 136312118 136317527 Mal1g5868 1 136312118 136317527 ECH