Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5848 ATGTTTGGCGACAACAAAAATAAAAACAATGGTAACAACACTAACATTCCTCGTCCACAGTTCATGCAATCCGAACCCCGATTTTCAACAACGGAAGCCTATAGCGATGATGAATACGCCATGCGTAGCAGCAGCGCCGCCTCCCCCATGAGCCCTTACTACTATGACCCCGGCAGGTTAAGTGGTGAAGGCTCACCAATGATGATGTCACCATGGAATCAAACAACAAATTCACCATTCTCAAAGCCACAATGGTCACAATACGAGGAATCAGCTCCACAGAACTCCCTAATCGGTTCACTGGTTCGCGAAGAAGGTCACATTTATTCTTTAGCTGCTTCAGGCGACTTATTGTACACCGGCTCAGACAGCAAGAACATTCGCGTGTGGAAGAATCTTCAAGAATATTGTGGATTCAAATCCAACAGTGGATTGGTTAAAGCAATCATTATCTCCGGTCAAAAAATCTTCACCGGTCACCAAGACGGTAAAGTCCGTGTTTGGAAAGTTTCTCTCAAGAACCCTAGCGTTCACAAACGTGCTGGAACATTACCAACACTCAAAGACATTTTCAAAAGCTCTATTAAACCAAGCAATTATGTCGAGGTTCGAAAACACAGAACTGCATTATGGATCAAACATTCCGATGCAGTTTCATGCCTAAGTCTTTCGCCAGACAAAATCTATCTCTACTCCGCTTCATGGGACAGAACAGTCAAAGTTTGGAGAATCGCTGATTCAAAGTGTTTGGAATCGATTACTTCCCACGAGGATGCAGTTAACTCCGTCGTTTGTGGAAACGACGGAATTGTTTTCTCTGGTTCCGCAGACGGAACCGTTAAGGTGTGGCTAAGAGAAGCACGTGGTAAAGCAACAAAACATGTAATGGTTAAACAACTTTTAAAACAAGAATGTGCGGTAACTGCTTTAGCAGTGGACCACACTGGTTCAATGGTTTATTGTGGTGCTTCTGATGGGTTAGTTAATTTTTGGGAACGTGATAAGCATTTTGAACACGGTGGGGTCCTCAAGGGTCATAAGCTTGCGGTTTTGTGTTTAGCTTCTGCTGGGAATTTGGTGTTTAGTGGTTCAGCTGATAAAACTATATGTGTGTGGAAAAGAGATGGAGTTATTCACACGTGTGTGTCTGTTTTAACGGGACATGATGGTCCCGTTAAATGTTTAGCAGTGGAACAGGATCGTGATTCTGATGCTAGAGGCAATCAACGGTGGATTTTGTATAGTGGAAGTTTGGATAAATCGGTTAAGGTTTGGAGTGTTTCGGAGAGTTTGCAGGCACACCAGCGTAGTATGATTTCCGATGCTGACTCGATACCTTCGGAATCCGATAGCAGTTATTCTTCAAGTCGGGCTGGTCACACTAAGAGAAATTAA 1395 0.4351 MFGDNKNKNNGNNTNIPRPQFMQSEPRFSTTEAYSDDEYAMRSSSAASPMSPYYYDPGRLSGEGSPMMMSPWNQTTNSPFSKPQWSQYEESAPQNSLIGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLQEYCGFKSNSGLVKAIIISGQKIFTGHQDGKVRVWKVSLKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRKHRTALWIKHSDAVSCLSLSPDKIYLYSASWDRTVKVWRIADSKCLESITSHEDAVNSVVCGNDGIVFSGSADGTVKVWLREARGKATKHVMVKQLLKQECAVTALAVDHTGSMVYCGASDGLVNFWERDKHFEHGGVLKGHKLAVLCLASAGNLVFSGSADKTICVWKRDGVIHTCVSVLTGHDGPVKCLAVEQDRDSDARGNQRWILYSGSLDKSVKVWSVSESLQAHQRSMISDADSIPSESDSSYSSSRAGHTKRN* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5848 464 Gene3D - 205 292 IPR015943 GO:0005515
Mal1g5848 464 PRINTS G protein beta WD-40 repeat signature 230 244 IPR020472 -
Mal1g5848 464 PRINTS G protein beta WD-40 repeat signature 413 427 IPR020472 -
Mal1g5848 464 PRINTS G protein beta WD-40 repeat signature 156 170 IPR020472 -
Mal1g5848 464 SUPERFAMILY WD40 repeat-like 100 434 IPR036322 GO:0005515
Mal1g5848 464 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 211 244 - -
Mal1g5848 464 MobiDBLite consensus disorder prediction 1 42 - -
Mal1g5848 464 Pfam WD domain, G-beta repeat 380 426 IPR001680 GO:0005515
Mal1g5848 464 Pfam WD domain, G-beta repeat 340 373 IPR001680 GO:0005515
Mal1g5848 464 Pfam WD domain, G-beta repeat 248 283 IPR001680 GO:0005515
Mal1g5848 464 Pfam WD domain, G-beta repeat 105 131 IPR001680 GO:0005515
Mal1g5848 464 Pfam WD domain, G-beta repeat 214 242 IPR001680 GO:0005515
Mal1g5848 464 PANTHER PROTEIN JINGUBANG 19 451 - -
Mal1g5848 464 ProSiteProfiles Trp-Asp (WD) repeats profile. 343 373 IPR001680 GO:0005515
Mal1g5848 464 MobiDBLite consensus disorder prediction 437 458 - -
Mal1g5848 464 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 252 IPR001680 GO:0005515
Mal1g5848 464 ProSiteProfiles Trp-Asp (WD) repeats profile. 385 435 IPR001680 GO:0005515
Mal1g5848 464 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 19 451 IPR045182 -
Mal1g5848 464 SMART WD40_4 94 131 IPR001680 GO:0005515
Mal1g5848 464 SMART WD40_4 336 373 IPR001680 GO:0005515
Mal1g5848 464 SMART WD40_4 246 284 IPR001680 GO:0005515
Mal1g5848 464 SMART WD40_4 132 169 IPR001680 GO:0005515
Mal1g5848 464 SMART WD40_4 204 243 IPR001680 GO:0005515
Mal1g5848 464 SMART WD40_4 378 426 IPR001680 GO:0005515
Mal1g5848 464 SMART WD40_4 293 332 IPR001680 GO:0005515
Mal1g5848 464 Gene3D - 85 204 IPR015943 GO:0005515
Mal1g5848 464 Gene3D - 293 463 IPR015943 GO:0005515
Mal1g5848 464 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 283 - -
Mal1g5848 464 MobiDBLite consensus disorder prediction 437 464 - -
Mal1g5848 464 CDD WD40 105 426 - -
Mal1g5848 464 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 283 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5848 Mal-Chr1 136080526 136082217 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5848 1 136080526 136082217 Mal1g5848 1 136080526 136082217 ECH
Mal2g1766 2 21193572 21198104 Mal1g5848 1 136080526 136082217 PCT