Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5819 ATGCAACAATCCAACGGTTCAGATTCATCAACAACACCGTCAGAGACGACGAACAAACAACAACGACAACAACCACCGCCACCGGTGGCGGTACCACAACAGTGGATTCCGATGCAATATCCAACGGCGGCGATGGTAATGCCACATCACATGATGCCACCTCAACATTACGCGCCGCCGCCTTATGTTCCTTATCACCACCATCACCATCAGTTTCAGCAACCGTTGCACGTGCCGCCACATCAGCATCAGAATCATCAGAATCAGCATGGATCCAATGGAGAGAATAAGACTTTGTGGATTGGTGATTTGCATAACTGGATGGATGAGAATTATCTTCATCGCTGTTTTGCTTCTACTGGAGAGATTACCTCCATCAAGGTTATTCGCAATAAGCACAGTGGAATTTCCGAGGGTTATGGATTTGTGGAATTCTTTACACATGCCACAGCTGAGAAAGTGTTGCAGAATTATGCTGGAATTTTGATGCCAAATGCTGATCAAGCTTTCCGTTTGAACTGGGCAACATTTAGCACAGGAGACAAGGGTTCAGATAATGTTACTGACCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGTGTGTTGCATGAAACTTTTTCTAGTTCATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTATGATGCCAATACTGGCCGTTCAAAGGGCTACGGGTTCGTCAGGTTCGGAGATGAAGGTGAAAGATCTCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCCATGCGTATCGGTGCTGCAACTCCAAGGAAATCATCTGGTCATCAACAAGGAGGCCAGTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACAAACACAACCATATTTGTTGGAGGACTCGACCCTAATGTTTCAGATGAAGATCTTAAGCAAACATTCTCTCAGTATGGTGAGATAGCCTCTGTTAAGATACCTGTTGGAAAGGGCTGTGGTTTTGTCCAATTTGCAAACAGAAATAATGCTGAAGAGGCTTTGCAGAAGCTAAATGGGACAATGATTGGTAAGCAAACCGTTCGTCTCTCTTGGGGCCGCAATCCAGCATATAAACAATTTAGGCTTGACATTGGAAGCTGGGCTGGTCCATATTTTCCATCGCCTATTTATGATGGATACGGATATGCAATGCCTTCTCCTCATCATGACCCAAACATGTATCCTCTAGCTTATGGTGGTTACCCTATTTACGGAGGCCACTCACAACAAGTAAGCTAA 1278 0.4421 MQQSNGSDSSTTPSETTNKQQRQQPPPPVAVPQQWIPMQYPTAAMVMPHHMMPPQHYAPPPYVPYHHHHHQFQQPLHVPPHQHQNHQNQHGSNGENKTLWIGDLHNWMDENYLHRCFASTGEITSIKVIRNKHSGISEGYGFVEFFTHATAEKVLQNYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDEGERSQAMTEMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSSQSEADSTNTTIFVGGLDPNVSDEDLKQTFSQYGEIASVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPAYKQFRLDIGSWAGPYFPSPIYDGYGYAMPSPHHDPNMYPLAYGGYPIYGGHSQQVS* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5819 425 MobiDBLite consensus disorder prediction 68 94 - -
Mal1g5819 425 Gene3D - 63 189 IPR012677 -
Mal1g5819 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 269 IPR000504 GO:0003723
Mal1g5819 425 SUPERFAMILY RNA-binding domain, RBD 191 369 IPR035979 GO:0003676
Mal1g5819 425 SUPERFAMILY RNA-binding domain, RBD 65 178 IPR035979 GO:0003676
Mal1g5819 425 CDD RRM3_NGR1_NAM8_like 294 365 - -
Mal1g5819 425 MobiDBLite consensus disorder prediction 270 301 - -
Mal1g5819 425 MobiDBLite consensus disorder prediction 77 94 - -
Mal1g5819 425 Gene3D - 271 372 IPR012677 -
Mal1g5819 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 177 IPR000504 GO:0003723
Mal1g5819 425 MobiDBLite consensus disorder prediction 1 24 - -
Mal1g5819 425 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 28 424 - -
Mal1g5819 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 163 IPR000504 GO:0003723
Mal1g5819 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Mal1g5819 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 360 IPR000504 GO:0003723
Mal1g5819 425 SMART rrm1_1 191 265 IPR000504 GO:0003723
Mal1g5819 425 SMART rrm1_1 98 173 IPR000504 GO:0003723
Mal1g5819 425 SMART rrm1_1 296 363 IPR000504 GO:0003723
Mal1g5819 425 CDD RRM2_SECp43_like 189 268 - -
Mal1g5819 425 CDD RRM1_SECp43_like 98 178 - -
Mal1g5819 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 367 IPR000504 GO:0003723
Mal1g5819 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 28 424 - -
Mal1g5819 425 Gene3D - 190 265 IPR012677 -
Mal1g5819 425 MobiDBLite consensus disorder prediction 265 301 - -
Mal1g5819 425 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5819 Mal-Chr1 135689339 135693418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5819 99 375 Eukaryotic Initiation Factors Gene Family AT4G34110 29.433 1.72e-31 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5819 1 135689339 135693418 Mal1g5819 1 135689339 135693418 ECH
Mal1g5819 1 135689339 135693418 Mal2g1220 2 14330835 14334390 PCT