Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5759 ATGCAAGGGCAGAGAGGCACAATTGGTTCCTCATCTGAAACCTTCGAGTTTGATTGTGGATCTACATCAAGTACTGCTGCAGTTGATCAGCACATTTTTTGGAATAATATGCACACTCCTGCTGAAAATCGGATACCCGAATTTTTACTTTCCCCAAGTGAGATGAACCCATCTCATGGGAATTCTGTAAACCATGAATGGCAGAACTTGAGCGGATGGAGCTTAGGCGAACCAAGTTCCAGTAATACACAGAATGAAGTTAACAACAATGAGCTGAAAAGGGAGTTAGGGTTATCACCTCCGATAAATGGTGGTGCTATGGCTGGTCCAAGACTAGAAGAAAGGCACTTCGAACCAACTAATGCATTTTCATTGGATAATGTCAATACAGGTCCTATGTATATGTGCAGCCCCAATTCTCATTTGGTGCCACAAAATCTCAATTTTAATGCCAGTTTAACAGATAATGGCAACGATAATAGCTATCATGTGGAAGTTGAACATCCTAACATGCACAAATCTAGTGGTCCTCTAAATGAGCATATTCCACCTCCGATTAGTTCTGGTTCTTTTTTGCTTCCTTCTGGTGGAAGCAACAGCTTTTTTGTTGGGGATACCGATGGTCGGCCCGGTTGTTCTCTAGACACCCGCCGTGTGTCTTGTAAACGAAAGGCAGTTGAAGGAAATGGTGGGCAATCTTCAGACGGTGGAAGTTCTAGTTATAGTCAGCATACAGTTGCCAGTGCTTGGAATACTCTTCCTACCCAGGATTATGCAGGGAGCAATTTTAACCGATCCGCACCGGCAGGACAAGTGAATGCAAGACTTGGCCTGAGTGTCGGAGATGGATCTTCTGAAACCATACCTGAGTCAACTGTTGCAGGAAGCTCGGAAAGCTTCCACAGAAATTTTCGTTTGAGGATAAATCCTTCAAGCCAGCAAATTTCTCTTCCTCCAACCACATTCTCAAATGGGGGTGTGATCAGAAACTCCAGTGTTCCTTCATCTTCTCCAATGTTGCAAAGGTTCCACCCTATCGATAATCCTCTGGACTTGAGGTCAGCACAGCCAGTAGATTTGACGCTTCCTCAAAGCCAGCCTCTTCTAGTTCATGTTCCTGCTTTACCGAGGAGTGCGCAATCCGTTAGGTGGAGTGGTGGTTCTAGCTCAACAAACAACCATTCATCAAATTCAGCTTTATGCGTGGATAGGGATAATCAACCACATGAGGGAGCAAGCTCGAGATCTATGCCTAGAAACATTTTAGATCACCCGGTGTTTGTACCTGCAAATGTAAGAAATGCAGCTCGAAATCCAACTAGGTCTTCAAGTAGTGCAAATTTAAGTATTCCTGGAAATGTTGCTTCCTCATCACGGACTGCTCCAAATCCTGCCGCTTTGAATCCATCATCTGTCTCGGCGTGGGTTTCTCGTCCTAATCCTCAGCAGTATCCGCGCAGGTTGTCTGAGTATGTTCGTCGGTCTTTGTTTTCTCCTGGTTCTGAAGCTGGAGGTTCAAGCAATAACTATTCTTCCTTGCGTGGTCCTTCTACTTCGTCAGAATCAAGAGGACTGCCATCTGGGAGTGGGACCAACCCTGGATCGTCTCCATGGTTGGAGAGGTCTGCTGATAGTGAATTTGGAATTCCCTATTCCTTACGATCTTTAGCTGCTGCTGGTGAAGGAAGTAGCAGGCTTGTATCCGAGCTCCGCAATGTGTTGGGCCTCATGCGTAGGGGTGGGAACTTGCGGTTTGAGGATGTTATGATTCTCGACCATTCAATGTTTGCTGGGATTGCTGATATGCATGATCGACACAGAGATATGCGGCTTGATGTTGATAACATGTCTTATGAGGAGTTATTGGCTCTGGAAGAACGCATCGGAAATGTGAGCACAGGATTGAATGAAGAGACCATTATGAAGCATTTGAAACAGAAGAAATATTCAGTTGATGGATCAGGTTCTCAGAGTGAGGCAGAACCCTGCTGTGTTTGTCAGGAGGAGTATAAAAATGGAGATGATCTTGGATCGTTGGATTGCGGGCACGATTATCATATCGACTGTATTAAGCAGTGGCTAACGCATAAGAATCTGTGTCCAATTTGTAAGACAACAGGCTTGTCAACATGA 2133 0.4496 MQGQRGTIGSSSETFEFDCGSTSSTAAVDQHIFWNNMHTPAENRIPEFLLSPSEMNPSHGNSVNHEWQNLSGWSLGEPSSSNTQNEVNNNELKRELGLSPPINGGAMAGPRLEERHFEPTNAFSLDNVNTGPMYMCSPNSHLVPQNLNFNASLTDNGNDNSYHVEVEHPNMHKSSGPLNEHIPPPISSGSFLLPSGGSNSFFVGDTDGRPGCSLDTRRVSCKRKAVEGNGGQSSDGGSSSYSQHTVASAWNTLPTQDYAGSNFNRSAPAGQVNARLGLSVGDGSSETIPESTVAGSSESFHRNFRLRINPSSQQISLPPTTFSNGGVIRNSSVPSSSPMLQRFHPIDNPLDLRSAQPVDLTLPQSQPLLVHVPALPRSAQSVRWSGGSSSTNNHSSNSALCVDRDNQPHEGASSRSMPRNILDHPVFVPANVRNAARNPTRSSSSANLSIPGNVASSSRTAPNPAALNPSSVSAWVSRPNPQQYPRRLSEYVRRSLFSPGSEAGGSSNNYSSLRGPSTSSESRGLPSGSGTNPGSSPWLERSADSEFGIPYSLRSLAAAGEGSSRLVSELRNVLGLMRRGGNLRFEDVMILDHSMFAGIADMHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEETIMKHLKQKKYSVDGSGSQSEAEPCCVCQEEYKNGDDLGSLDCGHDYHIDCIKQWLTHKNLCPICKTTGLST* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5759 710 SMART ring_2 663 703 IPR001841 -
Mal1g5759 710 MobiDBLite consensus disorder prediction 498 541 - -
Mal1g5759 710 MobiDBLite consensus disorder prediction 381 421 - -
Mal1g5759 710 MobiDBLite consensus disorder prediction 1 20 - -
Mal1g5759 710 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 709 IPR045191 GO:0061630
Mal1g5759 710 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 709 - -
Mal1g5759 710 MobiDBLite consensus disorder prediction 436 481 - -
Mal1g5759 710 Pfam Ring finger domain 663 704 IPR001841 -
Mal1g5759 710 SUPERFAMILY RING/U-box 662 706 - -
Mal1g5759 710 CDD RING-H2_TTC3 662 704 - -
Mal1g5759 710 ProSiteProfiles Zinc finger RING-type profile. 663 704 IPR001841 -
Mal1g5759 710 MobiDBLite consensus disorder prediction 224 243 - -
Mal1g5759 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 707 IPR013083 -
Mal1g5759 710 MobiDBLite consensus disorder prediction 381 403 - -
Mal1g5759 710 MobiDBLite consensus disorder prediction 500 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5759 Mal-Chr1 134672560 134676637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5759 1 710 C3H Transcription Factor Family AT2G15530 32.577 1.12e-77 261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5759 1 134672560 134676637 Mal7g3338 7 98096817 98099879 ECH
Mal1g5759 1 134672560 134676637 Mal1g5759 1 134672560 134676637 ECH