Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5757 ATGGCACAGATTCAGGTTCAGCATCAAACTCCGGCACCGGTTTCATCACCTTCAAACGGTGTCGTTGCGACTCCGAACGCGAATCAGTTCGTTACGACGTCGTTGTACGTTGGTGATCTTGAGATGAATGTTAACGATTCTCAGCTTTACGATCTGTTTAATCAGGTTGGGCAAGTTGTTTCCGTTAGGGTTTGCAGGGATTTGGCTACGCGTCGTTCGCTTGGTTATGGTTATGTTAATTTCACTAACCCTCAGGATGCGGCTAGGGCATTGGATGTGCTGAATTTTACTCCACTGAACAACAAATCTATCAGGGTTATGTATTCTCATCGTGATCCTAGTAGTCGCAAGAGTGGCACTGCTAATATTTTTATCAAGAATTTGGATAAGACAATTGATCACAAAGCTTTACATGACACCTTTTCTACTTTCGGACAAATTCTGTCTTGCAAAATAGCGACTGATGGTTCTGGTCAGTCTAAAGGCTATGGTTTTGTCCAATTTGAGGCTGAGGATTCTGCTCAGAATGCAATTGATAAGTTGAATGGAATGCTGATCAATGACAAGCAGGTGTATGTGGGTCATTTCCTACGTAAGCAAGATAGAGATAACGTTCTAAGTAAGACAAAATTTAACAATGTCTATGTGAAAAACCTATCAGAGTCATTTACAGAAGATGACTTGAAAAATGAATTTGGAGCTTATGGGACCATTACTAGTGCTGTTTTGATGAGAGATGCTGATGGTAGGTCGAAGTGTTTTGGATTTGTCAATTTTGAAAATCCAGAAGATGCTGCTAAAGCTGTTGAGGCATTGAATGGTAAGAAAGTTGATGACAAGGAGTGGTATGTGGGTAAAGCCCAGAAAAAATCTGAAAGGGAGCAAGAGCTGAAAGGACGGTTCGAGCAGACTGTAAAGGAATCTGTTGTAGACAAATTCCAAGGTCTGAATTTATATCTCAAGAACTTGGATGATTCCATTAGTGATGAAAAGCTCAAGGAAATGTTCTCCGAGTTTGGCACAATTACCTCATACAAGATTATGCGAGATCCAAATGGAGTCAGCAGGGGATCTGGATTTGTTGCATTTTCAACTCCAGAGGAAGCAACAAGAGCTCTTGGAGAGATGAATGGAAAAATGATTGTTAGCAAACCTCTCTATGTTGCTGTTGCACAGAGAAAGGAAGATAGAAGAGCAAGGTTGCAGGCACAATTTTCACAGATGAGGCCTGTTGCAATTACACCTTCTGTTGCTCCCCGAATGCCACTCTACCCTCCTGGTACTCCTGGTCTTGGACAACAATTTATGTATGGTCAAGGACCCCCAGCCATGATGCCTCCACAAGCTGGATTTGGATATCAGCAGCAGCTTGTTCCTGGGATGAGACCTGGTGGTGGTCCTATGCCAAGCTACTTTGTTCCAATGGTTCAGCAGGGCCAACAAGGTCAGCGCCCTGGTGGTCGTCGAGGAGGTCCTGGTCAACAACCCCCGCAGCAAGTGCCAATGATGCAGCAGCAGATGATTCCAAGACAACGTGTTTATCGCTACCCTCCTGGTCGCAACAACATTCAAGATGCCCCTGTGCAAAACATGGCTGGAGGAATGATGTCCTATGACATGGGAGGTCTGCCAATCCGTGATGTTGCACAGCCTATGCCCATTCATGCTTTGGCTACAGCACTTGCGAATGCTCCCCCTGAACAGCAGAGGACTATGCTTGGGGAGGCTTTGTATCCGCTAGTAGATCAGCTGGAACATGATTCAGCAGCGAAGGTTACTGGCATGCTTTTGGAGATGGACCAGCCTGAAGTCTTGCATCTGATTGAGTCACCAGATGCTCTCAAGGCTAAAGTTGCTGAAGCCATGGATGTTTTGAGAAATGTTTCTCAACAGCAAGGCAACAGCCCGGCAGATCAACTAGCCTCACTCTCTCTCAATGACTCTTAG 1947 0.4489 MAQIQVQHQTPAPVSSPSNGVVATPNANQFVTTSLYVGDLEMNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPLNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSTFGQILSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVYVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENPEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSISDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEATRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPLYPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSYFVPMVQQGQQGQRPGGRRGGPGQQPPQQVPMMQQQMIPRQRVYRYPPGRNNIQDAPVQNMAGGMMSYDMGGLPIRDVAQPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVSQQQGNSPADQLASLSLNDS* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5757 648 MobiDBLite consensus disorder prediction 627 648 - -
Mal1g5757 648 CDD RRM1_I_PABPs 34 113 - -
Mal1g5757 648 SUPERFAMILY RNA-binding domain, RBD 212 397 IPR035979 GO:0003676
Mal1g5757 648 SMART poly_2 565 628 IPR002004 GO:0003723
Mal1g5757 648 MobiDBLite consensus disorder prediction 478 504 - -
Mal1g5757 648 PANTHER RNA BINDING PROTEIN 22 634 - -
Mal1g5757 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Mal1g5757 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 289 IPR000504 GO:0003723
Mal1g5757 648 CDD RRM3_I_PABPs 211 290 - -
Mal1g5757 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
Mal1g5757 648 Pfam Poly-adenylate binding protein, unique domain 561 625 IPR002004 GO:0003723
Mal1g5757 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 386 IPR000504 GO:0003723
Mal1g5757 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 105 IPR000504 GO:0003723
Mal1g5757 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 191 IPR000504 GO:0003723
Mal1g5757 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 282 IPR000504 GO:0003723
Mal1g5757 648 Gene3D - 314 414 IPR012677 -
Mal1g5757 648 CDD RRM4_I_PABPs 315 393 - -
Mal1g5757 648 MobiDBLite consensus disorder prediction 1 20 - -
Mal1g5757 648 Gene3D - 1 115 IPR012677 -
Mal1g5757 648 Gene3D - 116 205 IPR012677 -
Mal1g5757 648 SMART rrm1_1 317 389 IPR000504 GO:0003723
Mal1g5757 648 SMART rrm1_1 122 194 IPR000504 GO:0003723
Mal1g5757 648 SMART rrm1_1 34 107 IPR000504 GO:0003723
Mal1g5757 648 SMART rrm1_1 213 285 IPR000504 GO:0003723
Mal1g5757 648 SMART rrm2_1 317 389 IPR003954 GO:0003676
Mal1g5757 648 SMART rrm2_1 34 107 IPR003954 GO:0003676
Mal1g5757 648 SMART rrm2_1 122 194 IPR003954 GO:0003676
Mal1g5757 648 SMART rrm2_1 213 285 IPR003954 GO:0003676
Mal1g5757 648 SUPERFAMILY RNA-binding domain, RBD 33 202 IPR035979 GO:0003676
Mal1g5757 648 Gene3D - 206 312 IPR012677 -
Mal1g5757 648 SUPERFAMILY PABC (PABP) domain 499 643 IPR036053 GO:0003723
Mal1g5757 648 Gene3D - 549 632 - -
Mal1g5757 648 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 34 626 IPR006515 GO:0003723
Mal1g5757 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 393 IPR000504 GO:0003723
Mal1g5757 648 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 630 IPR002004 GO:0003723
Mal1g5757 648 CDD RRM2_I_PABPs 119 195 IPR045305 -
Mal1g5757 648 PANTHER POLYADENYLATE-BINDING PROTEIN 22 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5757 Mal-Chr1 134637493 134642072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5757 1 646 Eukaryotic Initiation Factors Gene Family AT4G34110 68.971 0.0 862
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5757 1 134637493 134642072 Mal1g5757 1 134637493 134642072 ECH