Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5709 ATGGCTCTAGAAGCACTTAACTCACCCACTTCTACTACCCCAAAATTCACCTTCGATGAACCAAATCTTCCATGGACTAAACGAAAACGTTCTAAACGTTCACGTTCATGTACTGAAGAAGAGTATCTTGCTCTCTGTCTCATCATGCTTGCTCGTGGCCACACCAACCGCCACGATTTCAAGCCTTTGATTCATCCACCACCGGTAACCGCCGACAACAATAACACCAAACTCAGTTACAAATGTTCTGTCTGCAACAAAGAGTTTTCTTCTTATCAAGCCCTAGGTGGACACAAAGCCAGTCACCGGAAAAACTCCACCGCCACTGCCGGCACAGGCGGTGATGATCACCCATCAACTTCTTCAGCTGCAACCACAAGCTCAGCCAACACCGGAAACGGTGGTGGCGGTGTTAGATCTCATGAGTGTTCGATTTGTCATAGGTCGTTTCCGACAGGACAAGCTTTGGGTGGACACAAACGTCGTCACTACGAAGGTGTTGTTGGTGGTGGTGGTGGTGCTGTAACTGTCTCTGAAGGTGTGGGGTCCACACATAGTCACCATCGTGATTTCGATCTGAATATCCCGGCTTTTCCGGAGTTTGCTAATAAGGTTGGAGAAGATGAAGTTGAGAGTCCTCATCCAGTGATGAAGAAGAAGAAGGCTAGTGTTTTCGTGGTGCCCAAGATTGAAATTCCAAATTTTCATTGA 711 0.4726 MALEALNSPTSTTPKFTFDEPNLPWTKRKRSKRSRSCTEEEYLALCLIMLARGHTNRHDFKPLIHPPPVTADNNNTKLSYKCSVCNKEFSSYQALGGHKASHRKNSTATAGTGGDDHPSTSSAATTSSANTGNGGGGVRSHECSICHRSFPTGQALGGHKRRHYEGVVGGGGGAVTVSEGVGSTHSHHRDFDLNIPAFPEFANKVGEDEVESPHPVMKKKKASVFVVPKIEIPNFH* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5709 236 SUPERFAMILY beta-beta-alpha zinc fingers 80 163 IPR036236 -
Mal1g5709 236 MobiDBLite consensus disorder prediction 95 140 - -
Mal1g5709 236 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 223 IPR044653 GO:0003700
Mal1g5709 236 SMART c2h2final6 80 102 IPR013087 -
Mal1g5709 236 SMART c2h2final6 141 163 IPR013087 -
Mal1g5709 236 MobiDBLite consensus disorder prediction 1 19 - -
Mal1g5709 236 Pfam C2H2-type zinc finger 141 164 - -
Mal1g5709 236 Pfam C2H2-type zinc finger 80 104 - -
Mal1g5709 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 163 IPR013087 -
Mal1g5709 236 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Mal1g5709 236 PANTHER ZINC FINGER PROTEIN ZAT10 1 223 - -
Mal1g5709 236 MobiDBLite consensus disorder prediction 100 137 - -
Mal1g5709 236 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Mal1g5709 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Mal1g5709 236 MobiDBLite consensus disorder prediction 1 22 - -
Mal1g5709 236 Gene3D Classic Zinc Finger 77 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5709 Mal-Chr1 133795377 133796087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5709 1 220 C2H2 Transcription Factor Family AT1G27730 51.489 3.03e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g5709 zf-C2H2_6 8.7e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5709 1 133795377 133796087 Mal1g0573 1 6575333 6576196 ECH
Mal1g5709 1 133795377 133796087 Mal1g5709 1 133795377 133796087 ECH