Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5708 ATGGAACCTATAGGTGCTTTCCCTGAAGGAGAATGGGATTTCTTTCGCAAAATGTTTGCTAGTGAAGATCATGAATATTACTCACAACAATTTCTTGATCAAAATTCACTTCTTCTAGGGGAAAATGATGGATTGAGCAATGGAACACAATCCACATTTTGCTCTGCTGAAATTGGTGAAAATGAGCGTATGTTTTATTCTTTTGATCATGTTCATATCCCAAACTCTAACTATATTTCTCAATCTCAAGAGAATAGTTACAATAGCAATTCTAGTGCTAGTGATGATACAAATTACTATTTTAGTTATCCTGATCAAGTACTAGAAAATAATATTAATAATTGTATGTCCAATGATTTTTGCATGGATGAGAAATTTTTTGCCTCTTCTATTCCATCCCTTAATGAGATTGTAATGGAAGAGAATGTGAAATTGAATGAAGATTCAGCAAGTGATGATCATATTTTGGAGAAAAATGGTTACAATACTCAAATGATGGAACCTATTGATTTTCCCACCAAGCATGAGTTGCCAATGCAGCTCAAAAGGAAACTTGATGTGATACAAGTTGAGGTTCCTATTGAAGAAAAAATTAACAAGTCAGAGAATCAAAAGAAAAAACCTCGAGTTTCAAAAGATGGGCAAGGAAGCATGAAAAATGCAAGGTCTAAGAAGAACCAGAAACTTGCTAGTAAAGAAGAGGATATCACAGAAGAGATTAATAGAGGATCAAATGGAAATAGCTCTAGTAGTAACAACATATCAGAGGATGATAATGCTTCTCAAGAAAATAGTGGAGGAACTACTCTCAACTCAAATGGGAAGACAAGAGCTAGTAGAGGTTCAGCAACAGATCCTCAAAGTCTTTATGCAAGGAAAAGAAGAGAGAGAATTAATGAGCGACTAAGAGTCTTACAGAATCTTGTACCAAACGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTACAGACTCAAATCAAGCTTTTGAGCTCTGATGATATGTGGATGTATGCACCACTTGCTTATAATGGACTTGACCTTGGACTCAATCTCAACCTCAACAGTTCTCTACCACTATGA 1107 0.3505 MEPIGAFPEGEWDFFRKMFASEDHEYYSQQFLDQNSLLLGENDGLSNGTQSTFCSAEIGENERMFYSFDHVHIPNSNYISQSQENSYNSNSSASDDTNYYFSYPDQVLENNINNCMSNDFCMDEKFFASSIPSLNEIVMEENVKLNEDSASDDHILEKNGYNTQMMEPIDFPTKHELPMQLKRKLDVIQVEVPIEEKINKSENQKKKPRVSKDGQGSMKNARSKKNQKLASKEEDITEEINRGSNGNSSSSNNISEDDNASQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRVLQNLVPNGTKVDISTMLEEAVNYVKFLQTQIKLLSSDDMWMYAPLAYNGLDLGLNLNLNSSLPL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5708 368 MobiDBLite consensus disorder prediction 226 240 - -
Mal1g5708 368 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 366 - -
Mal1g5708 368 MobiDBLite consensus disorder prediction 198 213 - -
Mal1g5708 368 MobiDBLite consensus disorder prediction 241 286 - -
Mal1g5708 368 Pfam Helix-loop-helix DNA-binding domain 292 332 IPR011598 GO:0046983
Mal1g5708 368 CDD bHLH_AtIND_like 283 345 - -
Mal1g5708 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 282 331 IPR011598 GO:0046983
Mal1g5708 368 Gene3D - 281 339 IPR036638 GO:0046983
Mal1g5708 368 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 366 - -
Mal1g5708 368 MobiDBLite consensus disorder prediction 198 294 - -
Mal1g5708 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 282 347 IPR036638 GO:0046983
Mal1g5708 368 SMART finulus 288 337 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5708 Mal-Chr1 133761915 133763646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5708 221 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27740 63.699 1.53e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal1g5708 HLH 1.8e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5708 1 133761915 133763646 Mal1g5708 1 133761915 133763646 ECH