Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5028 ATGTCTTTTCAGTGTATGAGTTGCAAGCAACTAAGAACTGTTATAATGTTACAAGGGAAGAGTGGTTATTCAAATCTTCTCAACACAAAAATGAGGTTTCCTTTTAGATTTTCGAAAATGTGTTACCGGATGAAGCATAAATTTACAGAAAACAAGTTTGTGGAAATAGACCAACATGGTGTAAAGAGCACGGTTTTTACTTGTATGGATTGTAACATCCCTGACCTAATCGGAAATGGAAGCGGTGAAATGAAATCTAAAATGAATCTGAAAGATGCAGTAGATGATTTCGACATCTCCTTGATGTGCAAGGTATTTCCATCAATTACTTTGGGTAGTGCTCCTCAAGTGGGTTTGTATGATGGGACCACAACATATTCTGAAACAAATATCATTTCGGCAACCAAAGATTTTGAACAACATTTATATGATTCTTCAGAGGTAAGGGAGGTGCAACATCCCTTGCCTTCTCTGCATGTCGATTGTTCTAGTGTAACATCTTCGGCATTACGAAAAGATGAATCTTTTCCCTGTCCTTTAACACCTCAATCAGTGTCTTCAATATATGAAGAAAAATTGGATAAAGTTACTGGGGAGGATTCTCCAAAGAAAGCGGGGCTGCAATCACAATCAAACCTTACACTTAATGAGTTATCTCTTGACAAATCTATCAATTGCTTACCTGGATTAACTAAGAAGCAATACGAGCAACTAGATAACTGTGGGTTTCACACGTTACGGAAATTGCTGCACCATTTTCCGCGATCATATGCTAATCTACAGAATGCACATGGTAATATTGATGATGGGCAGTATTTGATCTTTGTTGGAGAAGTCTTATCTTCAAGGGGAGTCAAAGCTAATTGTTCAATTTCATTTCTTGAGGTGATTGTTGGTTGTCAGATTGCAGACAGGGAATCAGCTGTTGAGCATGTGACCGGTAAAGTTGGGCAAACGAAGACAATTTATTTGCATTTGAAGAAATTTTTCCGTGGCACACGTTTTACTTTTACAGGTTTCCTAAATAGTATTGCGAACAAGTATCAAGTGAGAGACATAGCATGTGTCAGTGGCAAGGTTAGGACTATGCCTGCTAAAGATCACTTCGAGATGAGAGAATATAATATTGACGTGCTTGAAGATGGAAAAGATTTATCCCTTTGTGCTAAAGAGAGGCCATATAGTATCTACCCTTCAAAAGGGGGTTTAAACCCAACATTTCTTCGGGACATTATTGCAAGAGCTTTACATGCCTTGCCGGTCAATGTTGATCCAATTCCGAAAGATATCAGAGAGGAATTTGGACTCTTAAGTCTTCATGATGCATATTTTGGAATTCACAAACCAAAGGATAATAGTGAAGCTGATCTGGCCCGCAAGAGACTTATATTTGATGAATTTTTTTACCTGCAGTTAGGACGATTATTCCAAATGCTCGAAGGTCTTGGTACTCAAATAGAAAAGGATGGATTGCTAGATAAGTATAGAAGACCAGAAAATAACAGTGTGTGTACAGAGGAATGGTCCTGTCTCACCAAGAAGGTTTTGGAGCTTCTTCCCTATACTCTTACTTCTGGTCAACTGCAAGCTGTTTCAGAAATTATTTGGGATTTAAAAAGACCAGTTCCAATGAATCGGCTACTTCAGGGTGATGTTGGATGTGGGAAAACTATTGTTGCTTTTCTTGCATGCATGGAGGTTATTGGCTCTGGCTATCAGGCCGCTTTCATGGTTCCAACTGAGTTGCTTGCAATCCAGCATTATGAACACTTGCTTACCTTGCTTGAAAATTTGGACGAGGTCAAGTTCAAGCCGACTGTTGCTTTACTCACTGGTTCAACCCCACTAAAACAATCACGGATTATTCGCAAGGGTATCCAGACCGGAGAAATTTCAATCATCATCGGGACCCACAGTTTGATAGCAGATAGTGTGGAATTCTCAGCCTTGCGTATTGCTGTGGTGGATGAGCAACATCGCTTTGGTGTGATTCAAAGAGGAAGATTTAACAGTAAGTTATTTTATAAATCTTCAATTTCGAGTCTGGAGGATGCTATTACAGACGAGTCCTCAAAGAGTGATGATTTTATGGCTCCTCATGTTCTTGCCATGTCTGCTACTCCCATCCCAAGGACCCTTGCACTTGCTTTATATGGTGATATGTCACTGACACAGATAACCGACTTACCACCAGGAAGAATTCCTGTTCAAACATATACCATTGAAGGAAGTGACAAAGGATTCGAGGATGCCTACAAGATGATGATGGATGAGTTGGAAGATGGGGGAAAAGTTTATATTGTCTACCCAATTGTCGAACTTTCAGAGCAGTTACCTCAGCTTCGTGCTGCTTCTGAAGATCTCAAAGTTATCTCAGACCGGTTTCCAGGATACAATTGTGGTTTATTACATGGGAGAATGAGAAGTGAAGAAAAAGAAGTAACGTTAGGGAAGTTTAGGACTGGAGAATTGAATATACTACTTGCCACTCCAGTGATTGAAATTGGTGTTGATGTTCCAGATGCATCGATGATGGTTGTGATGAATTCTGAGAGGTTTGGAATGGCCCAGTTACACCAACTCAGGGGCCGAGTTGGACGCGGAACAAGGCAGTCAAAATGTATATTAATAGCATCAACTGCCAGTGGCCTTAATCGTCTGAAAGTACTGGAGCATTCATCAGATGGGTTTCATCTCGCTAATATGGACCTATTATTACGTGGACCTGGTGACTTGCTTGGCAAGAAACAGTCTGGACATCTTCCCGAGTTTCCTATTACCAGATTGGAAGTGGATGGGAATATTTTACAAGACGCACACGTTGCTGCACTGAAAATCTTAAGTGCTTCCCATGATCTGGAGCAATTTCCTGCACTTAAATTGGAGCTTGGCACGAGACAGCCGCTTTGCTTGCTAGGTGATTGA 2925 0.4048 MSFQCMSCKQLRTVIMLQGKSGYSNLLNTKMRFPFRFSKMCYRMKHKFTENKFVEIDQHGVKSTVFTCMDCNIPDLIGNGSGEMKSKMNLKDAVDDFDISLMCKVFPSITLGSAPQVGLYDGTTTYSETNIISATKDFEQHLYDSSEVREVQHPLPSLHVDCSSVTSSALRKDESFPCPLTPQSVSSIYEEKLDKVTGEDSPKKAGLQSQSNLTLNELSLDKSINCLPGLTKKQYEQLDNCGFHTLRKLLHHFPRSYANLQNAHGNIDDGQYLIFVGEVLSSRGVKANCSISFLEVIVGCQIADRESAVEHVTGKVGQTKTIYLHLKKFFRGTRFTFTGFLNSIANKYQVRDIACVSGKVRTMPAKDHFEMREYNIDVLEDGKDLSLCAKERPYSIYPSKGGLNPTFLRDIIARALHALPVNVDPIPKDIREEFGLLSLHDAYFGIHKPKDNSEADLARKRLIFDEFFYLQLGRLFQMLEGLGTQIEKDGLLDKYRRPENNSVCTEEWSCLTKKVLELLPYTLTSGQLQAVSEIIWDLKRPVPMNRLLQGDVGCGKTIVAFLACMEVIGSGYQAAFMVPTELLAIQHYEHLLTLLENLDEVKFKPTVALLTGSTPLKQSRIIRKGIQTGEISIIIGTHSLIADSVEFSALRIAVVDEQHRFGVIQRGRFNSKLFYKSSISSLEDAITDESSKSDDFMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVQTYTIEGSDKGFEDAYKMMMDELEDGGKVYIVYPIVELSEQLPQLRAASEDLKVISDRFPGYNCGLLHGRMRSEEKEVTLGKFRTGELNILLATPVIEIGVDVPDASMMVVMNSERFGMAQLHQLRGRVGRGTRQSKCILIASTASGLNRLKVLEHSSDGFHLANMDLLLRGPGDLLGKKQSGHLPEFPITRLEVDGNILQDAHVAALKILSASHDLEQFPALKLELGTRQPLCLLGD* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5028 974 TIGRFAM recG: ATP-dependent DNA helicase RecG 241 942 IPR004609 GO:0003678|GO:0006281|GO:0006310
Mal1g5028 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 730 IPR027417 -
Mal1g5028 974 SMART helicmild6 772 869 IPR001650 -
Mal1g5028 974 Gene3D - 480 727 IPR027417 -
Mal1g5028 974 Pfam Helicase conserved C-terminal domain 756 868 IPR001650 -
Mal1g5028 974 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 6 974 - -
Mal1g5028 974 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 894 952 IPR045562 -
Mal1g5028 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 730 923 IPR027417 -
Mal1g5028 974 SUPERFAMILY Nucleic acid-binding proteins 218 420 IPR012340 -
Mal1g5028 974 SMART ultradead3 519 737 IPR014001 -
Mal1g5028 974 CDD DEXHc_RecG 462 730 - -
Mal1g5028 974 Gene3D - 736 907 IPR027417 -
Mal1g5028 974 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 747 905 IPR001650 -
Mal1g5028 974 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 6 974 - -
Mal1g5028 974 Pfam DEAD/DEAH box helicase 544 711 IPR011545 GO:0003676|GO:0005524
Mal1g5028 974 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 537 726 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5028 Mal-Chr1 120966533 120983480 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5028 1 120966533 120983480 Mal1g5028 1 120966533 120983480 ECH