Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5000 ATGAGCAAATCCAACAATTTCTTTCATAATCTCGTAAAACCCTTCAAATTTGGTTCCACCGGAGAGGGAAAAAGTGAAGACGATATTCAGAACATAGCTACACAAGAGCAGAGGACATTTTCCTATGAAACATTGGTTGCTGCTACCAACAACTTTCATGTTCATAATAAACTTGGAGAGGGAGGCTTTGGACCTGTTTACAAGGGTAAATTGAATGATGGGAGAGAGATAGCAGTGAAGAAGTTATCACATGGTTCAAATCAAGGGAAGAAACAGTTTGTTGCGGAGGCGAAGCTGTTGACTCGTGTGCAGCACCGTAATGTGGTGAATTTGTTTGGTTATTGTATCCACGGCAGAGAGAAGCTTCTCGTGTATGAGTATATCCATCGTGAGAGCCTTGACAAGTTCCTATTCAGATCAAACAAGAAACAAGAGCTAGATTGGAAACGTAGATTTGACATAATCAATGGAGTGGGAAGAGGCTTACTTTATCTTCATGAAGACTCTCACATTTGCATAATCCATCGTGACATAAAAGCAGCCAACATTTTGCTTGATGAAAAATGGGTCCCTAAGATTGCTGACTTTGGCTTGGCTCGTCTCTTTCCAGAAGATGAAACTCATGTCAATACACGTGTGGCTGGAACACATGGATACATGGCTCCGGAGTACTTGATGCATGGACATCTATCTGTGAAGGCAGACGTGTATAGCTATGGAGTTTTGGTGTTGGAGTTGATCACTGGTCATCGAAACTCCTCCTCTGATTCAGCCTTCAACGGAGACAATCTCCTTAATTGGGCATACAAGCTATACAAGAAAGGGAAATGGTTAGAAATGGTAGATCCCACATTGGCATCTTCCGTGACAACCACTGAGCAAGTGGAAGTGTGCGTTCGAGTGAGTCTGTTATGCACACAAGGCGATCCACAACTTCGTCCAACAATGGGACGTGTGGTGCTGATGTTATCAAAGAAGCCACCAAGTCACATGGAAGAACCAACGAGACCAGGTTTACCCGGTTCTAGATACAAAAGAACATTGCCTCGTAGTCGTACACCTTTCACTACTGATGATGAGAATTCATCTGCTTCACACATTGATTCAAGCAATTGTGACACTACTACTAATGCTACCAATTCCACTTCTTCTGCAACAAGAACAACCTCAAGAACAACCTCTGCCACTGCACAAGTAGACTCCCGAGGGAAACGTCCAATGTTTCCTTGA 1230 0.4309 MSKSNNFFHNLVKPFKFGSTGEGKSEDDIQNIATQEQRTFSYETLVAATNNFHVHNKLGEGGFGPVYKGKLNDGREIAVKKLSHGSNQGKKQFVAEAKLLTRVQHRNVVNLFGYCIHGREKLLVYEYIHRESLDKFLFRSNKKQELDWKRRFDIINGVGRGLLYLHEDSHICIIHRDIKAANILLDEKWVPKIADFGLARLFPEDETHVNTRVAGTHGYMAPEYLMHGHLSVKADVYSYGVLVLELITGHRNSSSDSAFNGDNLLNWAYKLYKKGKWLEMVDPTLASSVTTTEQVEVCVRVSLLCTQGDPQLRPTMGRVVLMLSKKPPSHMEEPTRPGLPGSRYKRTLPRSRTPFTTDDENSSASHIDSSNCDTTTNATNSTSSATRTTSRTTSATAQVDSRGKRPMFP* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5000 409 ProSiteProfiles Protein kinase domain profile. 52 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal1g5000 409 MobiDBLite consensus disorder prediction 325 409 - -
Mal1g5000 409 SMART serkin_6 52 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal1g5000 409 PANTHER RECEPTOR-LIKE KINASE 3 377 - -
Mal1g5000 409 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 377 - -
Mal1g5000 409 PIRSF TyrPK_CSF1-R 49 154 - -
Mal1g5000 409 PIRSF TyrPK_CSF1-R 138 398 - -
Mal1g5000 409 Pfam Protein tyrosine and serine/threonine kinase 53 320 IPR001245 GO:0004672|GO:0006468
Mal1g5000 409 Gene3D Phosphorylase Kinase; domain 1 18 127 - -
Mal1g5000 409 SUPERFAMILY Protein kinase-like (PK-like) 36 342 IPR011009 -
Mal1g5000 409 CDD STKc_IRAK 58 325 - -
Mal1g5000 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Mal1g5000 409 Gene3D Transferase(Phosphotransferase) domain 1 128 334 - -
Mal1g5000 409 MobiDBLite consensus disorder prediction 349 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5000 Mal-Chr1 120593460 120598465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5000 32 339 Receptor kinase-like Gene Family AT4G11530 50.160 4.98e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mal1g5000 PK_Tyr_Ser-Thr 1.2e-49 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5000 1 120593460 120598465 Mal1g5000 1 120593460 120598465 ECH