Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0573 ATGGCTTTAGAGTTACAAGCTTTGAATTCTTCTCCTACAGGAGCTACTATTCCTTTTCCAAGCTTCAAACATCATCAACAAGAAAATCAAGAGATTCATGAGCGTGAGTCTTTGGTTAATAAAAAGAAACGATCAAAACGACCGCGTATTGGTATTCCACCCACTGAAGAAGAGTATCTTGCTCTCTGTCTCATCATGCTCTCACAAAGCAACAACAACAATGAAAAAATCAACATCGCTGAATCTCATCACCAAATTGAATCATCATCTTCACAGCAACAACAACAACAACAACCGTTGCAGTCATCACCACCGTCGCCGGTGAAGCTGAATCACCGGTGCAGTGTCTGTAACAAAGCTTTTCCATCTTATCAAGCACTTGGTGGTCACAAAGCCAGCCACCGCAAATCCTCATCAGAAAACCAATCCGCTACCGTCAACGACACCGTCTCTGTTTCTGTCTCGACCGGCACCGGTAAGATGCATGAGTGTTCCATCTGTCACAAGAGTTTTCCTACTGGTCAAGCTCTTGGTGGACACAAACGATGCCACTACGACGGAGGCAACAACAATCACAATAACAGTAACAGCAACGTGAACGTTAATAACAGCAGTGGAATCACAATCTCTGACGGCGCCGCCGCATCCTCCTCAATCAGCCACCGTGGATTTGACCTGAACTTACCTGCACCTCTCACTGAATTCTGGTCTCCGTTGGGATTCGGTGGTGGTGATACCAAGAAGAACAAGGTGAACGTTCATCTCGCCGGGATCGGTGAACAAGAAGTGGAAAGTCCGTTACCGGTAACCGCCAAAAGGCCGCGTTTGTTTTCGGGTGAAGACAATGATGATGAAACGGTGTAG 864 0.463 MALELQALNSSPTGATIPFPSFKHHQQENQEIHERESLVNKKKRSKRPRIGIPPTEEEYLALCLIMLSQSNNNNEKINIAESHHQIESSSSQQQQQQQPLQSSPPSPVKLNHRCSVCNKAFPSYQALGGHKASHRKSSSENQSATVNDTVSVSVSTGTGKMHECSICHKSFPTGQALGGHKRCHYDGGNNNHNNSNSNVNVNNSSGITISDGAAASSSISHRGFDLNLPAPLTEFWSPLGFGGGDTKKNKVNVHLAGIGEQEVESPLPVTAKRPRLFSGEDNDDETV* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0573 287 MobiDBLite consensus disorder prediction 26 41 - -
Mal1g0573 287 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Mal1g0573 287 MobiDBLite consensus disorder prediction 1 25 - -
Mal1g0573 287 SMART c2h2final6 112 134 IPR013087 -
Mal1g0573 287 SMART c2h2final6 162 184 IPR013087 -
Mal1g0573 287 MobiDBLite consensus disorder prediction 1 52 - -
Mal1g0573 287 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 278 IPR044653 GO:0003700
Mal1g0573 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 184 IPR013087 -
Mal1g0573 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 139 IPR013087 -
Mal1g0573 287 MobiDBLite consensus disorder prediction 128 149 - -
Mal1g0573 287 MobiDBLite consensus disorder prediction 83 109 - -
Mal1g0573 287 SUPERFAMILY beta-beta-alpha zinc fingers 112 184 IPR036236 -
Mal1g0573 287 MobiDBLite consensus disorder prediction 83 111 - -
Mal1g0573 287 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 278 - -
Mal1g0573 287 MobiDBLite consensus disorder prediction 260 287 - -
Mal1g0573 287 ProSitePatterns Zinc finger C2H2 type domain signature. 114 134 IPR013087 -
Mal1g0573 287 Gene3D Classic Zinc Finger 110 184 - -
Mal1g0573 287 Pfam C2H2-type zinc finger 162 186 - -
Mal1g0573 287 Pfam C2H2-type zinc finger 112 136 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0573 3 276 C2H2 Transcription Factor Family AT1G27730 40.351 1.25e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g0573 zf-C2H2_6 1.5e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0573 1 6575333 6576196 Mal1g0573 1 6575333 6576196 ECH
Mal1g5709 1 133795377 133796087 Mal1g0573 1 6575333 6576196 ECH