Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0475 ATGAACATGGCACTCTCACGATCATTCAGAAGATTCCCCAATCTTCTTCCACTCTCTAAATTTTCTTTAACAACCTCATCGACTTCACATTTTCAATCACCCACCGTTCAATTCATCCAGAACCCATCTGAGTCTCTCAAATTCCACATTTTTCCATTTCACACATCACGTCTTAATAGTAAACCCAACAACAACACCAACCCACATGCCGAAACAATCTGCAAAATCCTATCCACCACACCCGATTCACCCCTCGAAGTCTCTCTCCGCAACTTTCCGGCGGAGGTCTCACCGGAGCTAGTTGTTGATGTTTTGAGCAAGCTCAGCAATGCTGGCATTCTCGCTCTTTCGTTCTTCCGTTGGGCCGAGAAACAAAAAGGATTCAAACACACCACAGAGATTTTCCATGCTTTGATTGAAGCATTGGGTAAGATCAAACAGTTTAAAATGATTTGGAATTTGGTTGATGAAATGAAACAAAGAAAGTTGCTCAATGGTGACACTTTTGCACTCATTGCTCGTCGCTATGTCAGAGCTAAGATCGTTAAGGAAGCATTGAAAACTTTTGAGAGGATGGAAAAATATGGATTGAAGCCTCAAATATCGGATTTCAACAAGTTAATTGATGTTTTATGCAAGTCAAAGTTTCATGTTGAGAAAGCACAGGAACTGTTCGATAAAATGCGGCAATGGAATTTAGAGCCTAATCTTAAGTCATATACTATTTTGTTAGAAGGTTGGAGTCAACAGCAAAATTTATTGAAGGTTAATGAGGTTTGTAGGGAGATGAAGGATGATGGTTTTGAGCCTGATGTGGTTACCTATGGGATAATCATCAATGCTTGTTGTAAGGCTAAAAAATATGATGAGGCTATTGGTATTTATCATGAGATGCTATCAAAGAGTGTAAATCCTAGTCCTCATATATATTGTACTTTGATTACTGGTCTTGGTAATGGGAATAGATTGAATGAAGCTCTTGAATTTTTTGAAAAATCTAAGATTAGTGGATTTCCACCTGAAGCACCTACTTATAATGCTGTTGTTGGTGCTTACTGCTGGTCAATGTGGATTGATGATGCTTACAGAATTGTTGGTGAGATGAAAGAACTTGGGATCGGTCCGAATTCTCGAACGTATGATATAATACTTGTTCACTTGATAAAGGGTGGAAGAACCAAAGAAGCTTACTCAGTTTTCCAGAGAATGAGTAGTGAGACGGGGTGTGAGCCGAGCGTAAGCACGTATGCAATCATGGTGAGGATGTTTTGTAATGAAAACCAATTGGACATGGCAATGATAGTTTGGAATGAGATGAAAGACAAGGGAATCCTTCCTGGAATACACATGTTCTCGACGTTGATCATTTCATTGTGTCATGAAAATAAGTTGGATGATGCGTGTAAATACTTTCAACAAATGTTGGATGTTGGGATTCGGCCTACTACTAATATGTTCAGTGCCTTCAAGAGAACTCTAATGGCTGCGGGAATGGAGAATACTGTGATACATTTCGCAAAGAAGGTTGATAAACTGAGGAACACTCCATTAATTGCTTGA 1560 0.3929 MNMALSRSFRRFPNLLPLSKFSLTTSSTSHFQSPTVQFIQNPSESLKFHIFPFHTSRLNSKPNNNTNPHAETICKILSTTPDSPLEVSLRNFPAEVSPELVVDVLSKLSNAGILALSFFRWAEKQKGFKHTTEIFHALIEALGKIKQFKMIWNLVDEMKQRKLLNGDTFALIARRYVRAKIVKEALKTFERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILLEGWSQQQNLLKVNEVCREMKDDGFEPDVVTYGIIINACCKAKKYDEAIGIYHEMLSKSVNPSPHIYCTLITGLGNGNRLNEALEFFEKSKISGFPPEAPTYNAVVGAYCWSMWIDDAYRIVGEMKELGIGPNSRTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDMAMIVWNEMKDKGILPGIHMFSTLIISLCHENKLDDACKYFQQMLDVGIRPTTNMFSAFKRTLMAAGMENTVIHFAKKVDKLRNTPLIA* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0475 519 Gene3D Tetratricopeptide repeat domain 216 383 IPR011990 GO:0005515
Mal1g0475 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Mal1g0475 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Mal1g0475 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Mal1g0475 519 TIGRFAM PPR: pentatricopeptide repeat domain 344 376 IPR002885 -
Mal1g0475 519 TIGRFAM PPR: pentatricopeptide repeat domain 168 199 IPR002885 -
Mal1g0475 519 TIGRFAM PPR: pentatricopeptide repeat domain 415 447 IPR002885 -
Mal1g0475 519 TIGRFAM PPR: pentatricopeptide repeat domain 309 340 IPR002885 -
Mal1g0475 519 TIGRFAM PPR: pentatricopeptide repeat domain 204 236 IPR002885 -
Mal1g0475 519 TIGRFAM PPR: pentatricopeptide repeat domain 450 482 IPR002885 -
Mal1g0475 519 TIGRFAM PPR: pentatricopeptide repeat domain 379 413 IPR002885 -
Mal1g0475 519 TIGRFAM PPR: pentatricopeptide repeat domain 273 306 IPR002885 -
Mal1g0475 519 TIGRFAM PPR: pentatricopeptide repeat domain 239 272 IPR002885 -
Mal1g0475 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Mal1g0475 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 235 IPR002885 -
Mal1g0475 519 SUPERFAMILY TPR-like 271 476 IPR011990 GO:0005515
Mal1g0475 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 411 IPR002885 -
Mal1g0475 519 Gene3D Tetratricopeptide repeat domain 78 215 IPR011990 GO:0005515
Mal1g0475 519 Gene3D Tetratricopeptide repeat domain 384 510 IPR011990 GO:0005515
Mal1g0475 519 Pfam PPR repeat 175 197 IPR002885 -
Mal1g0475 519 Pfam PPR repeat 135 162 IPR002885 -
Mal1g0475 519 Pfam PPR repeat family 344 384 IPR002885 -
Mal1g0475 519 Pfam PPR repeat family 270 317 IPR002885 -
Mal1g0475 519 Pfam PPR repeat family 204 246 IPR002885 -
Mal1g0475 519 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 66 516 - -
Mal1g0475 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Mal1g0475 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Mal1g0475 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Mal1g0475 519 Pfam Pentacotripeptide-repeat region of PRORP 394 508 IPR033443 -
Mal1g0475 519 PANTHER OS01G0505500 PROTEIN 66 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0475 Mal-Chr1 5473104 5474663 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0475 114 519 Miscellaneous Gene Families AT4G11690 24.384 3.51e-39 148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0475 1 5473104 5474663 Mal1g0475 1 5473104 5474663 ECH