Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0440 ATGGCTTCATGGAGAATCGTTTCATCTCTGATACGATCTTCCATTCGTCCATCTCAATCCAAATCATTGATCACCGCCTCAACATCGAGAATCTCTTCTCAATCACGTGCATCTCCCTACGCTTACCTTCTCAACCGTGTCACCGAGTATGCCACAGCCGCGGCTGCTGCAGCTCCCGCTCCTCCTCAGGCTCCTCCGTCTAAAAAAGTTGCTGACGGTGGTGGAAAGATTACCGATGAATACACCGGTAAGGGTGCCATTGGACAGGTTTGTCAGGTCATTGGTGCTGTGGTAGATGTGAGATTCGAAGAAGGTTTGCCTCCGATTCTTACTGCGCTTGAGGTTCTTGATCATTCTACCCGATTGGTGTTGGAGGTTGCACAACATATGGGTGAAGGTGTTGTCAGAACTATTGCTATGGATGCCACTGAAGGAGTTGTTAGAGGGTGGCGCGTTCTCAACACCGGCTCCCCTATCAGTGTTCCCGTTGGCAGGGCTACTCTTGGACGTATCATGAATGTTATTGGAGAACCTATCGATCACAAAGGCGAATTTGAAACCGAGCATTTTTTGCCTATTCATAGAGAAGCTCCTACTTTTGTTGAACAAGCAACCGAACAACAAATTCTTGTTACTGGTATCAAGGTTGTTGATCTGCTTGCACCATACCAAAGAGGAGGAAAGATTGGATTGTTTGGCGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAACTTATTAACAATGTCGCAAAGGCTCATGGTGGTTTCTCTGTTTTTGCTGGTGTTGGAGAACGAACCCGAGAGGGTAACGACTTGTATAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGGTGATAAGCAGAGTGAAAGCAAATGTGCTCTTGTGTATGGTCAAATGAACGAGCCCCCTGGTGCTCGTGCCCGTGTTGGTCTTACTGGACTAACCGTTGCTGAACATTTCCGTGACGCTGAAGGACAAGATGTGCTTCTTTTCGTCGACAACATTTTCCGCTTTACTCAAGCAAACTCGGAGGTGTCTGCATTGCTTGGTCGTATCCCATCTGCTGTTGGTTATCAACCAACTTTGTCTACTGATCTCGGAGGTCTTCAAGAGCGTATTACAACTACCAAGAAGGGTTCAATTACCTCTGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACCTTTGCTCACTTGGATGCTACAACAGTGTTGTCAAGACAGATTTCTGAGCTTGGTATCTATCCTGCTGTTGATCCATTGGATTCAACATCTCGTATGCTTTCTCCACTTATTTTGGGTGATGAGCACTACCAAACTGCTCGTGGTGTACAACAAGTTCTTCAAAACTACAAGAATCTTCAAGATATCATTGCTATTTTGGGAATGGATGAGCTTAGTGAAGATGATAAATTGACTGTTGCACGTGCCCGTAAAATTCAACGTTTCTTAAGTCAGCCTTTCCACGTGGCTGAAGTCTTCACTGGTGCCCCAGGCAAATATGTTGAGTTGAAGGAGAACACTCAAAGTTTCCAGGGTGTGTTGGATGGCAAATACGATGACCTCTCAGAGCAGGCATTTTATATGGTCGGTGGTATCGAGGAAGTCATTGCAAAGGCGGAGAAGATTGCCAAAGAATCAGCAGCATCTTCATCTTAA 1686 0.4573 MASWRIVSSLIRSSIRPSQSKSLITASTSRISSQSRASPYAYLLNRVTEYATAAAAAAPAPPQAPPSKKVADGGGKITDEYTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVLDHSTRLVLEVAQHMGEGVVRTIAMDATEGVVRGWRVLNTGSPISVPVGRATLGRIMNVIGEPIDHKGEFETEHFLPIHREAPTFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGDEHYQTARGVQQVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKENTQSFQGVLDGKYDDLSEQAFYMVGGIEEVIAKAEKIAKESAASSS* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0440 561 Gene3D ATP synthase, F1 beta subunit 1 50 IPR042079 -
Mal1g0440 561 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 6 557 - -
Mal1g0440 561 Gene3D - 159 436 IPR027417 -
Mal1g0440 561 PIRSF ATPase_subunit_beta 3 558 - -
Mal1g0440 561 Gene3D - 76 158 - -
Mal1g0440 561 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 437 553 - -
Mal1g0440 561 CDD F1-ATPase_beta 158 439 - -
Mal1g0440 561 CDD ATP-synt_F1_beta_C 441 548 - -
Mal1g0440 561 TIGRFAM atpD: ATP synthase F1, beta subunit 87 552 IPR005722 GO:0015986|GO:0045261|GO:0046933
Mal1g0440 561 Hamap ATP synthase subunit beta [atpB]. 85 552 IPR005722 GO:0015986|GO:0045261|GO:0046933
Mal1g0440 561 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 84 158 IPR036121 GO:0046034|GO:1902600
Mal1g0440 561 CDD ATP-synt_F1_beta_N 86 159 - -
Mal1g0440 561 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 213 434 IPR000194 GO:0005524
Mal1g0440 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 440 IPR027417 -
Mal1g0440 561 PANTHER ATP SYNTHASE 6 557 - -
Mal1g0440 561 Pfam ATP synthase F1 beta subunit 1 46 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Mal1g0440 561 SMART AAA_5 225 497 IPR003593 -
Mal1g0440 561 Gene3D - 437 557 IPR024034 -
Mal1g0440 561 Pfam ATP synthase alpha/beta family, beta-barrel domain 90 156 IPR004100 GO:0046034|GO:1902600
Mal1g0440 561 ProSitePatterns ATP synthase alpha and beta subunits signature. 425 434 IPR020003 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0440 Mal-Chr1 5107763 5115938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0440 117 491 Primary Pumps ATPases(2) AT1G20260 28.500 5.88e-29 118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0440 1 5107763 5115938 Mal1g0440 1 5107763 5115938 ECH