Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0410 ATGGACTCAAGTTCATCAAGCTTTCTTTTGAACTCTTCAAATTTTCACTCAGTTTTCTATCAGGACAAACATGATGATGGCATAATTGATCTTGGTCTTAGTCTTGGAACTGTTCAACATGATGCGTATCATTCTTCTGCTAACTTGTATGATGATGACCTTATGGATTGGCCTAATAATCTCAAGAATTCAAGCACAACACATTCTAGATCTGTCCATGAAAACTTTGACGAAGAGATAGAGGGGGTCCAGAGCAATGAGAGATGGGCTTATGTGAAGGTCAACATGGATGGGGTCTCCATTGGTAGGAAAATTAGTATTCTTGATCTTGGAGGATACTCAAGTCTAGCAATTCAATTAGAAGACATGTTTGGTAGCCAATCACTTTCTGGTATAAGATTGTTTCAATCTGGATCAGAGTATTCATTATTCTACAAAGACAGAGAAGACAATTGGAGGGCTGTGGGTGATGTCCCGTGGAAAGAGTTTATGGAATGTGTGAAAAGGCTAAGGATTGCACGGAAGAATGCAAGCTATGTTAACATTTCATCTTAG 555 0.3874 MDSSSSSFLLNSSNFHSVFYQDKHDDGIIDLGLSLGTVQHDAYHSSANLYDDDLMDWPNNLKNSSTTHSRSVHENFDEEIEGVQSNERWAYVKVNMDGVSIGRKISILDLGGYSSLAIQLEDMFGSQSLSGIRLFQSGSEYSLFYKDREDNWRAVGDVPWKEFMECVKRLRIARKNASYVNISS* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0410 184 SUPERFAMILY CAD & PB1 domains 89 172 - -
Mal1g0410 184 Pfam AUX/IAA family 62 175 IPR033389 -
Mal1g0410 184 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 1 179 - -
Mal1g0410 184 Gene3D - 83 183 - -
Mal1g0410 184 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 179 IPR003311 GO:0005634|GO:0006355
Mal1g0410 184 ProSiteProfiles PB1 domain profile. 89 177 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0410 Mal-Chr1 4690567 4691780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0410 79 175 B3 DNA Binding Superfamily AT1G34310 30.928 1.99e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Mal1g0410 AUX_IAA 8.8e-23 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0410 1 4690567 4691780 Mal1g0410 1 4690567 4691780 ECH