Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0343 ATGATCATTTGGTTTCTTAAGGTTGAACCAAACCAGACGAAGAGACCGCAAGGAAACCCATTAGATCTTAACAATTTGCCTGATGAATACTCTAGAGATCATGGTAAACAACTTCTTGAAGACACCGATCTACCCGGTTGCAGGAAAAAGAAAAACGGCGGGAAGGATGGAAAAGATGAATGTGGGAAGGTCTATGAATGTAGATTTTGTTCCCTCAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAGGGAAACAGAGACGCTGAACCATGCTCGTCAGCTAGTCTTCCGTAACGATCATAACCTTGCACCACAACCACCACCTCCCTCTCACCTAGTAGGCAACAGGAGGAGGAGGAGGGTATATTCCAGCAAATAA 402 0.4627 MIIWFLKVEPNQTKRPQGNPLDLNNLPDEYSRDHGKQLLEDTDLPGCRKKKNGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHNLAPQPPPPSHLVGNRRRRRVYSSK* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0343 133 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Mal1g0343 133 MobiDBLite consensus disorder prediction 81 133 - -
Mal1g0343 133 MobiDBLite consensus disorder prediction 13 32 - -
Mal1g0343 133 PANTHER ZINC FINGER PROTEIN JAGGED 15 124 IPR031113 GO:0007275
Mal1g0343 133 SUPERFAMILY beta-beta-alpha zinc fingers 63 93 IPR036236 -
Mal1g0343 133 Gene3D Classic Zinc Finger 47 113 - -
Mal1g0343 133 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Mal1g0343 133 PANTHER ZINC FINGER PROTEIN JAGGED 15 124 IPR045320 GO:0003700
Mal1g0343 133 MobiDBLite consensus disorder prediction 83 98 - -
Mal1g0343 133 MobiDBLite consensus disorder prediction 37 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0343 Mal-Chr1 3840874 3842494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0343 17 118 C2H2 Transcription Factor Family AT1G13400 55.882 1.22e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g0343 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0343 1 3840874 3842494 Mal1g0343 1 3840874 3842494 ECH