Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0335 ATGACTACTAGTTCAAGTAAAAACGTAGCAAACGCGGTTGGTGGCAAAACTGCTAGAGCTTGTGATAGTTGCATAACAAAGAGAGCACGTTGGTATTGTGCTGCTGATGATGCTTTTCTATGTCAAGCTTGTGACTCTTCTGTTCATTCAGCTAATTCATTGGCTCGAAGACATGAAAGAGTTCGTTTGAAAACTGCTTCATATAAGTCTACTGGTGGGGATGAATTCATCAACTGCAGTCCTTTTTCTGGCTTCACCAAGAAGGCAAGAACACCAAGACAGGGGAAACACAAATCATCATCGCCGGCGACGAATAATATTAATAACCCATTTCATCTTGTGCCGGAATTGGGGTTCGATGATGTTAATTCAAATTCACATGAAGAAAATGAGGAGCAGCTTCTTTATAGGGTACCAATTTTCGATCCTTTTGTTGCTGAATTATGTACTAGTTCTCCGTCCGTTGGTTCAATGGAAGGAGGACTAGGAGCGGTAATTGTTGCTTCTGCTTTCGCTCCTGATGTTGAAAACACCAGAAGCGAAAGCAGAGCTCAATTGGGTGGTGATAGTACTTATGAGATGGAAAGCTTTCAGGGGCTTCTTCCATCTGATATTGAATTAGCCGAATTTGCAGCTGATGTTGAGAGCTTGTTAGGTAGGGGATTAGAAAATGAGTGCATAGGGATGGAAGATTTAGGATTGATTGCTACAAAACATGAGGAGGGTGAGGAGTGGGAGTGTATTAGGAAGGTGAAGGAAGAAGGTGAAGAGAGCCATGAAGTACTTGAGGGAGATAATATTGACATGGAGAAAGAATCTTCATTTGAGTTGAATTTTGATTATGATGATTCTCATGAAACATGTGAAGAGGTGAAGGAGAAGTGTGGAGAACAAAATGAAAATAATAGTAGTTATAAAAAGGAGCAAAGGAAAATATCTTTGCAGCTAAATTATGATGCAGTAATCATTGCATGGGATAGCCAAAAGTGTCCATGGACTAATGGTGATAAGCCAAATTTGGATGCTGATGAAAGCTGGCTTGATTGCATGGGAATTTCTGGAATGGAGGTTAATTACCCTTATGGTGAATTGGGATATGGATGTCATCCAGTAATGGTAGATGGAGGCAGAGAGGCAAGGGTTTCAAGGTACAGAGAAAAGAGAAGAACAAGGTTGTTCTCAAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGGAGATTTGTGAAGAGGGCTTCGTTTGCAGTTCCAACATTTCCTTTGCTAAAATAA 1296 0.4043 MTTSSSKNVANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANSLARRHERVRLKTASYKSTGGDEFINCSPFSGFTKKARTPRQGKHKSSSPATNNINNPFHLVPELGFDDVNSNSHEENEEQLLYRVPIFDPFVAELCTSSPSVGSMEGGLGAVIVASAFAPDVENTRSESRAQLGGDSTYEMESFQGLLPSDIELAEFAADVESLLGRGLENECIGMEDLGLIATKHEEGEEWECIRKVKEEGEESHEVLEGDNIDMEKESSFELNFDYDDSHETCEEVKEKCGEQNENNSSYKKEQRKISLQLNYDAVIIAWDSQKCPWTNGDKPNLDADESWLDCMGISGMEVNYPYGELGYGCHPVMVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVPTFPLLK* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0335 431 CDD Bbox1_BBX-like 20 63 - -
Mal1g0335 431 Pfam B-box zinc finger 18 61 IPR000315 GO:0008270
Mal1g0335 431 ProSiteProfiles CCT domain profile. 377 419 IPR010402 GO:0005515
Mal1g0335 431 SMART bboxneu5 16 63 IPR000315 GO:0008270
Mal1g0335 431 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Mal1g0335 431 Pfam CCT motif 377 419 IPR010402 GO:0005515
Mal1g0335 431 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 5 424 - -
Mal1g0335 431 MobiDBLite consensus disorder prediction 88 108 - -
Mal1g0335 431 Coils Coil 288 308 - -
Mal1g0335 431 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0335 Mal-Chr1 3709818 3711273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0335 7 419 C2C2-CO-like Transcription Factor Family AT1G25440 47.430 2.53e-107 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mal1g0335 zf-B_box 9.6e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0335 1 3709818 3711273 Mal1g0335 1 3709818 3711273 ECH