Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0322 ATGAAGGTTTTCGTCAAGACTCTTAAAGGAACTCACTTCGAAATCGAAGTCACGCCACAAGACACGATTTCTGCAGTGAAGAAAAACATAGAAACTGTTCAAGGTGTAGATGTCTATCCTGCTGCATATCAAATGCTTATTCATCAAGGGAAAGTTCTAAAGGATGGTACCACCTTGGAGGAAAGTAAAGTAGCCGAAAATAGTTTCATTGTAATTATGCTTTCAAAGAGTAAGCCTGCGTCTGGTGAAGGGTCTGCTGCTTCAAATGCTCCTGCAGCGAAGGCCCCACAAACGAGTGCTGCTCCTACTTCAACCCCCCCAGTGTCTGCATCACCTCAAGTTCCTGCTGCAACTGCGGCACCACCTGCATCTGTTGCTGCACCTTCTCCAGCTCCTGCTCCTATATCTTCGGCACCGGCTACGGAAGGTTCTGATGTCTATGGGCAGGCTGCATCCAATCTGGTCGCTGGTAGCAACTTGGAGGGAACAGTTCAGCAAATCCTAGATATGGGTGGAGGAAGCTGGGATAGGGATACTGTTATTCGTGCTCTTCGAGCTGCCTTCAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCAGGTATACCCGAACAAGCTGAAGCTCCAGCAGTCTCCCGAGTGCCTGCAAGTGCACAACCTGCAAATCCTGAAACTGCAGCTGCAGCTCCACAAGCAGCACAGCCTGCTGCTGTTACCTCAACTGGACCTAATGCCAATCCTCTAGACCTCTTTCCCCAGGGCCTCCCAAATATTGGTGCTGGTGCTGCTGGTGCCGGATCTCTGGATTTTCTACGCAATAGTCAACAATTCCAAGCATTGCGAGCTATGGTGCAGGCAAATCCACAAATTTTGCAGCCCATGCTACAAGAGCTTGGCAAACAAAATCCTCAACTTATGAGATTGATTAGAGATCATCAGGCTGACTTCCTTCGTCTGATAAATGAACCTATGGAGGGCGGCGAAGGGAACAACCTATTGGGACAGATGGCTGCTGGCATGCCACAAGCAGTAACTGTCACCCCCGAGGAGCGCCAAGCTATTGAACGCCTTGAAGCAATGGGTTTTGATCGTGCTATAGTATTGGAGGTGTACTTTGCTTGCAACAAAAATGAGGAATTGGCCGCCAACTACCTTTTAGACCACATGCACGAGTTCGACGAACAATGA 1188 0.4857 MKVFVKTLKGTHFEIEVTPQDTISAVKKNIETVQGVDVYPAAYQMLIHQGKVLKDGTTLEESKVAENSFIVIMLSKSKPASGEGSAASNAPAAKAPQTSAAPTSTPPVSASPQVPAATAAPPASVAAPSPAPAPISSAPATEGSDVYGQAASNLVAGSNLEGTVQQILDMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQAEAPAVSRVPASAQPANPETAAAAPQAAQPAAVTSTGPNANPLDLFPQGLPNIGAGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLMRLIRDHQADFLRLINEPMEGGEGNNLLGQMAAGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFDEQ* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0322 395 Gene3D - 342 389 - -
Mal1g0322 395 Gene3D - 259 324 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mal1g0322 395 Pfam XPC-binding domain 268 323 IPR015360 GO:0003684|GO:0006289|GO:0043161
Mal1g0322 395 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 347 388 IPR015940 -
Mal1g0322 395 Pfam UBA/TS-N domain 350 385 IPR015940 -
Mal1g0322 395 Pfam UBA/TS-N domain 163 198 IPR015940 -
Mal1g0322 395 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 158 201 IPR015940 -
Mal1g0322 395 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Mal1g0322 395 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 394 - -
Mal1g0322 395 SUPERFAMILY UBA-like 157 212 IPR009060 GO:0005515
Mal1g0322 395 SMART CBM 266 309 IPR006636 -
Mal1g0322 395 SUPERFAMILY XPC-binding domain 265 330 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mal1g0322 395 PRINTS DNA repair protein Rad23 signature 361 375 IPR004806 GO:0006289
Mal1g0322 395 PRINTS DNA repair protein Rad23 signature 294 316 IPR004806 GO:0006289
Mal1g0322 395 PRINTS DNA repair protein Rad23 signature 344 360 IPR004806 GO:0006289
Mal1g0322 395 PRINTS DNA repair protein Rad23 signature 376 391 IPR004806 GO:0006289
Mal1g0322 395 Gene3D - 1 80 - -
Mal1g0322 395 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Mal1g0322 395 SUPERFAMILY UBA-like 331 393 IPR009060 GO:0005515
Mal1g0322 395 SMART uba_6 350 387 IPR015940 -
Mal1g0322 395 SMART uba_6 160 200 IPR015940 -
Mal1g0322 395 CDD UBA1_Rad23_plant 154 203 - -
Mal1g0322 395 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Mal1g0322 395 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 394 - -
Mal1g0322 395 Gene3D - 153 203 - -
Mal1g0322 395 MobiDBLite consensus disorder prediction 91 112 - -
Mal1g0322 395 TIGRFAM rad23: UV excision repair protein Rad23 1 393 IPR004806 GO:0006289
Mal1g0322 395 MobiDBLite consensus disorder prediction 214 244 - -
Mal1g0322 395 MobiDBLite consensus disorder prediction 81 143 - -
Mal1g0322 395 SMART ubq_7 1 75 IPR000626 GO:0005515
Mal1g0322 395 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0322 Mal-Chr1 3526134 3530013 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0322 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 7.55e-09 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0322 1 3526134 3530013 Mal1g0322 1 3526134 3530013 ECH