LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal1g0287	ATGTTTCGGGAGACAGTTGCTATGGCTACCGCCGCCTCCACGACGCGGTGGCCGACTCAACCAACTCAGTGGACTCGCGATCACGATAAGCTGTTCGAGCGAGCTCTGTTGATGGTGCCGGAGGATTTACCTGACCGGTGGGAGAAGATCGCCGAACAAGTTCCGGGTAAGTCGGCAGCGGAAGTTTGGGATCACTATGAAGCTTTGGTTCATGATGTTCTGGAAATTGATTCGGGTCGGGTTGAGGTGCCGAGTTATTCTGATGAATCGGCGGTGAGTGGTGGTGGATTGGCTGAATGGGATTCTTCGAATCAAATTTCGTTTGGTTCGAAGCCGAGACATGGCGGTGATAACGAGAGGAAGAAAGGAACACCGTGGACTGAAGAAGAACACAGGCTGTTTCTTATTGGGCTAAGCAAATTTGGCAAAGGAGATTGGAGAAGCATTTCGAGAAATGTTGTTGTGACAAGAACACCAACTCAGGTAGCTAGCCATGCTCAGAAGTATTTCCTTCGACAGAATTCGGTGAAGAAAGAGAGGAAAAGATCAAGTATTCATGACATAACATCAGTAGATAGTAACTCAGCTCCTATGCCTATTGATCGGAACTGGGTTCCTCCTCCTGGTGGTGGTTCAATGCAACAGTCTCCAGAAATGCATCATTATCCATCAAACAGTTTGCAAGATCAAATGGGTGCATATGGGTATTCAAACTATGGCTTTCAGATGTAA	732	0.474	MFRETVAMATAASTTRWPTQPTQWTRDHDKLFERALLMVPEDLPDRWEKIAEQVPGKSAAEVWDHYEALVHDVLEIDSGRVEVPSYSDESAVSGGGLAEWDSSNQISFGSKPRHGGDNERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITSVDSNSAPMPIDRNWVPPPGGGSMQQSPEMHHYPSNSLQDQMGAYGYSNYGFQM*	244

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal1g0287	243	MobiDBLite	consensus disorder prediction	97	111	-	-
	Mal1g0287	243	MobiDBLite	consensus disorder prediction	92	125	-	-
	Mal1g0287	243	Pfam	Myb-like DNA-binding domain	125	170	IPR001005	-
	Mal1g0287	243	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	19	243	IPR043363	-
	Mal1g0287	243	PANTHER	SYRINGOLIDE-INDUCED PROTEIN 1-3-1B	19	243	-	-
	Mal1g0287	243	Gene3D	-	19	83	-	-
	Mal1g0287	243	ProSiteProfiles	SANT domain profile.	121	174	IPR017884	-
	Mal1g0287	243	CDD	SANT	24	70	IPR001005	-
	Mal1g0287	243	SUPERFAMILY	Homeodomain-like	120	175	IPR009057	-
	Mal1g0287	243	SUPERFAMILY	Homeodomain-like	22	78	IPR009057	-
	Mal1g0287	243	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	118	174	IPR017930	-
	Mal1g0287	243	ProSiteProfiles	Myb-like domain profile.	24	70	IPR001005	-
	Mal1g0287	243	ProSiteProfiles	Myb-like domain profile.	118	170	IPR001005	-
	Mal1g0287	243	SMART	sant	122	172	IPR001005	-
	Mal1g0287	243	SMART	sant	20	72	IPR001005	-
	Mal1g0287	243	Gene3D	-	124	176	-	-
	Mal1g0287	243	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	121	173	IPR006447	GO:0003677
	Mal1g0287	243	MobiDBLite	consensus disorder prediction	180	200	-	-
	Mal1g0287	243	CDD	SANT	125	170	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal1g0287	Mal-Chr1	3104417	3105972	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Mal1g0287		Myb_DNA-binding	4.5e-11	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal1g0287	1	3104417	3105972	Mal1g0287	1	3104417	3105972	ECH