Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1942 ATGGATGGTGTTACTGTTAAGCTTGAGCCAGAACAGCAGGTTTCAGCTCTAGAATCTTCACCTCATGGTGACAGTGTTGATGGGGTTGCTACTAACAAGTCAGTGGCTGCATCTGGACTGAATGCTGTGATTCCTAATACAAGTAAGGTTACCATCTTCTATAATGGGAGTGTTCATATCTATGATGGAATACCGGCAGATAAGGTGCATGAAATAATGCTTATTGCTGCTGCTGCCGCCAAGTCTGTTGAAACAAAGAAGATTGGAATGCAATCTCCCATCATTTCACCAGTTCCCTCAAGGCCTTCTTCTCCACATGGAACCACTAATAATATTGCTTCAACCCAGGAACTTTGCTTTCCTGCAAAGAAGAGTTCCATCTGCAGGCTGCAAGAATTTCCAATAGCACGCCGTCATTCACTTCAAAGTTTTCTTGAGAAGCGGCGAAACAGGCTGGGGAGCAAAGCCCCTTATTCTTCTTCATCAACAACAAAAGCGGCAGTGGCAGACAACATAGAAAACAACTTCTCTGCTGACAATGCACCAGATTTGGTTTCCTCGAAACGACCAGAGGAGAAATTTCAGCCAACTATATCTGCCTCTTGA 606 0.4422 MDGVTVKLEPEQQVSALESSPHGDSVDGVATNKSVAASGLNAVIPNTSKVTIFYNGSVHIYDGIPADKVHEIMLIAAAAAKSVETKKIGMQSPIISPVPSRPSSPHGTTNNIASTQELCFPAKKSSICRLQEFPIARRHSLQSFLEKRRNRLGSKAPYSSSSTTKAAVADNIENNFSADNAPDLVSSKRPEEKFQPTISAS* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1942 201 MobiDBLite consensus disorder prediction 171 201 - -
Lja6g1942 201 Pfam Jas motif 134 159 IPR018467 -
Lja6g1942 201 SMART tify_2 43 78 IPR010399 -
Lja6g1942 201 MobiDBLite consensus disorder prediction 12 29 - -
Lja6g1942 201 PANTHER DIVERGENT CCT MOTIF PROTEIN 30 173 - -
Lja6g1942 201 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 30 173 IPR040390 -
Lja6g1942 201 Pfam tify domain 45 77 IPR010399 -
Lja6g1942 201 MobiDBLite consensus disorder prediction 1 29 - -
Lja6g1942 201 ProSiteProfiles Tify domain profile. 43 78 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1942 Lja-Chr6 47162692 47165171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1942 43 168 Tify Gene Family AT5G20900 48.031 7.36e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lja6g1942 tify 2.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1942 K13464 - gmx:100306045 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1452 4 13312575 13315833 Lja6g1942 6 47162692 47165171 PCT