Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3346 ATGGGATTGGGGTTGTTCAAGGCGTTATTTTGCTGTAGCACGTCTCAAGAAATTGAAATTGTGTCCTCAGATTCGTCTCCTCCTCGGAAACAATCTAGGAAAACCCAACAACAAATGCCAAGTCCATCATCTCCTTCTCGTCCCAGATATGTGTCCCAACCTTCACAAGTTGGACCAATTCTAGGGAAACCGTTCGTTGTGATAACTCAGTTGTATGAAATGAAGAAAGAACTTGGGAGAGGTCAATCTGGTGTCACATATCTATGTGTCGATAAGACCACGAGGAAAGAGTATGCATGCAAGTCCATTGCGAGGGCAAAACTTCTGAGCCAGCAAGAGATTGAGGATGTTAGAAGAGAGGTCATGATTCTTCAGCACCTTTCAGGGCAACCAAACATAGACAGGCAGAACGTGCACCTTGTGATGGAGTTGTGCAGCGGGGGTGAACTGTTTGATCGGATCATTGAGAAAGGGAACTACTCGGAGCGTGAAGCAGCAACAGTGATGAGGCAGATAGTGAATGTGGTTCACATATGCAATTTCATGGGTGTGATGCATAGAGACCTGAAGCCAGAGAATTTCTTGTTGGCCACCAAGGACGAGAATGCTGCAGTCAAAGCTACTGATTTTGGACTATCTCTTTTCATTGAAGAAGTACCTATCTCCTATGAATATGATTCCCCACCACCTCACCACCACCACCAACTGCCACAAAGAACCCAACAACAACAACCTCGACCTCAACCTCAACCTCAACCTCGTTACCGTGCTACAAACTCAGACCCAACTTCATCATTTGCTTCATCATCATTATCATCTAGTGAAAAACCAATACTAGACAAACCATACATTGACGTGAACTCTCTCTACACTTTTGGCAAGGAACTTGGAAGGGGACAATTTGGTGTCACTTATCTCTGCGTCGAGAAATCCACTGGACGCAAATTTGCTTGTAAATCCATTCCCAAGCGAAAGCTAACTAGAAAGAAGGAGATTCAGGATGTTAAGAGGGAAATCATGATCCTGCAGCATCTAACAGGACAACCCAACATCGTTGAGTTCAAGGGTGCTTATGAGGACCGGCAGAGCGTGCATTTGGTGATGGAGTTGTGTTATGGTGGTGAGCTTTTTGATAGGATCACCGCAAAGGGTAGTTACTCTGAGCGTGAAGCTGCTTCCACATTCAGGCAAATTGTGAATGTGGTTCATGCTTGTCATTTTATGGGGGTGATGCATAGGGACCTCAAGCCAGAGAATTTCTTGATGGTTAGTAAGGATGATAAGGCACCTTTGAAAGCCACCGATTTTGGATTGTCCGTCTTCATTGAAGAAGGTAAAGTGTATAGAGAAATTGTGGGAAGTCCATACTATGTGGCTCCAGAGGTGTTAAAACGGAACTATGGAAAGGAGATAGATGTGTGGAGCGCAGGAATCATTTTATACATCCTCCTCAGTGGGGTGCCTCCATTTTGGGCTGAAACCGAAAAAGGCATATTTGAAGCTATTTTGGAAGCTAAGCTTGATCTGGAGAGCGCACCATGGCCTTCTATTTCAGCTGTTGCAAAAGATTTGATCAGAAAAATGTTGACTTATGACCCTAAGAAACGCATTTCAGCTTCTGAAGCCCTTGAACATCCATGGATGAAGGAAGGTGGTGAAGCATCTGACAAGCCTCTAGACAATGCTGTTTTAATTAGGATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCCTTAAAGGTAATAGCAGAAAACCTGTCAGAGGAGGAAATCAAGGGGTTGAAACAAATGTTCAACAACATGGACACTGATCGCAGTGGCACAATCACATATGAAGAACTAAAATCTGGATTGTCCAAACTGGGATCAAAGCTTAGTGAATCTGAAATAAAACAGCTAATGGACGCTGCTGATGTTGACAAGAGTGGAACTATTGACTATCACGAATTTATTACTGCCACTATAAATCGGCATAAACTTGAAAAGGAAGAGAATTTGTTCAAGGCTTTTCAATACTTTGACAAGGATAACAGCGGTTATATAACAAGAGATGAACTTAGACATGCTTTGACTGAATATCACCTGGGAGATGAAGCGGCTATAGATGAAGTCATCGATGATGTGGACACTGACAATGATGGAAGGATTAATTACCAGGAGTTTGTAGCTATGATGAGAAAGGGGACACTTGATCATGATGAGAAAGAGAAACCACGATAA 2226 0.4299 MGLGLFKALFCCSTSQEIEIVSSDSSPPRKQSRKTQQQMPSPSSPSRPRYVSQPSQVGPILGKPFVVITQLYEMKKELGRGQSGVTYLCVDKTTRKEYACKSIARAKLLSQQEIEDVRREVMILQHLSGQPNIDRQNVHLVMELCSGGELFDRIIEKGNYSEREAATVMRQIVNVVHICNFMGVMHRDLKPENFLLATKDENAAVKATDFGLSLFIEEVPISYEYDSPPPHHHHQLPQRTQQQQPRPQPQPQPRYRATNSDPTSSFASSSLSSSEKPILDKPYIDVNSLYTFGKELGRGQFGVTYLCVEKSTGRKFACKSIPKRKLTRKKEIQDVKREIMILQHLTGQPNIVEFKGAYEDRQSVHLVMELCYGGELFDRITAKGSYSEREAASTFRQIVNVVHACHFMGVMHRDLKPENFLMVSKDDKAPLKATDFGLSVFIEEGKVYREIVGSPYYVAPEVLKRNYGKEIDVWSAGIILYILLSGVPPFWAETEKGIFEAILEAKLDLESAPWPSISAVAKDLIRKMLTYDPKKRISASEALEHPWMKEGGEASDKPLDNAVLIRMKQFRAMNKMKKLALKVIAENLSEEEIKGLKQMFNNMDTDRSGTITYEELKSGLSKLGSKLSESEIKQLMDAADVDKSGTIDYHEFITATINRHKLEKEENLFKAFQYFDKDNSGYITRDELRHALTEYHLGDEAAIDEVIDDVDTDNDGRINYQEFVAMMRKGTLDHDEKEKPR* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3346 741 ProSiteProfiles Protein kinase domain profile. 72 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g3346 741 ProSitePatterns EF-hand calcium-binding domain. 676 688 IPR018247 -
Lja5g3346 741 ProSiteProfiles Protein kinase domain profile. 290 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g3346 741 PANTHER SERINE/THREONINE-PROTEIN KINASE 37 220 - -
Lja5g3346 741 PANTHER SERINE/THREONINE-PROTEIN KINASE 250 734 - -
Lja5g3346 741 SUPERFAMILY Protein kinase-like (PK-like) 290 555 IPR011009 -
Lja5g3346 741 Pfam EF-hand domain pair 665 728 IPR002048 GO:0005509
Lja5g3346 741 Pfam EF-hand domain pair 596 656 IPR002048 GO:0005509
Lja5g3346 741 ProSiteProfiles EF-hand calcium-binding domain profile. 663 698 IPR002048 GO:0005509
Lja5g3346 741 SUPERFAMILY EF-hand 587 728 IPR011992 -
Lja5g3346 741 Pfam Protein kinase domain 290 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g3346 741 Pfam Protein kinase domain 72 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g3346 741 ProSitePatterns Protein kinases ATP-binding region signature. 296 319 IPR017441 GO:0005524
Lja5g3346 741 Gene3D - 560 736 - -
Lja5g3346 741 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Lja5g3346 741 ProSitePatterns EF-hand calcium-binding domain. 640 652 IPR018247 -
Lja5g3346 741 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 29 37 220 - -
Lja5g3346 741 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 29 250 734 - -
Lja5g3346 741 MobiDBLite consensus disorder prediction 253 275 - -
Lja5g3346 741 ProSiteProfiles EF-hand calcium-binding domain profile. 627 662 IPR002048 GO:0005509
Lja5g3346 741 Gene3D Transferase(Phosphotransferase) domain 1 150 259 - -
Lja5g3346 741 Gene3D Transferase(Phosphotransferase) domain 1 376 559 - -
Lja5g3346 741 SUPERFAMILY Protein kinase-like (PK-like) 70 219 IPR011009 -
Lja5g3346 741 CDD STKc_CAMK 290 547 - -
Lja5g3346 741 ProSitePatterns EF-hand calcium-binding domain. 604 616 IPR018247 -
Lja5g3346 741 MobiDBLite consensus disorder prediction 226 275 - -
Lja5g3346 741 MobiDBLite consensus disorder prediction 21 53 - -
Lja5g3346 741 Gene3D Phosphorylase Kinase; domain 1 292 375 - -
Lja5g3346 741 Gene3D Phosphorylase Kinase; domain 1 74 149 - -
Lja5g3346 741 MobiDBLite consensus disorder prediction 21 56 - -
Lja5g3346 741 SMART efh_1 631 659 IPR002048 GO:0005509
Lja5g3346 741 SMART efh_1 595 623 IPR002048 GO:0005509
Lja5g3346 741 SMART efh_1 667 695 IPR002048 GO:0005509
Lja5g3346 741 SMART efh_1 702 730 IPR002048 GO:0005509
Lja5g3346 741 ProSitePatterns EF-hand calcium-binding domain. 711 723 IPR018247 -
Lja5g3346 741 ProSiteProfiles EF-hand calcium-binding domain profile. 699 733 IPR002048 GO:0005509
Lja5g3346 741 SMART serkin_6 290 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g3346 741 SMART serkin_6 72 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g3346 741 ProSiteProfiles EF-hand calcium-binding domain profile. 591 626 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3346 Lja-Chr5 65149217 65154284 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja5g3346 Pkinase 6.5e-76 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3346 5 65149217 65154284 Lja5g3346 5 65149217 65154284 ECH