Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3320 ATGTCTATTTCTCTTTCTGTTTCTGTTACCTCCGCCGCGGGAATCTCTCATTCCCGATCCCGGCGGCGGTTGACGGTGGCTCTCCGATCACCTGACACGGTGTCCGTCGGCCCAGCCAGAATATTGACCAAACTGAAACACGAATGCGCCACTCCTCTGCCTCTTCTTCAGCAAGTCGCCACCAACATGTCAGCCGAAATGCGTGCCGGGCTTGCCGGCGACGGTGGACCTGGACTTCCCATGATACCAACCTTTGTTGACAGTCTCCCAACTGGAAATGAGAGAGGGTTGTTTTTTGCTTTGGATCTTGGTGGAACAAACTTCCGTGTGCTGAGGGTGCAGTTGGGTGGTGAAGATGAACGTGTCATTGCCACTGAGTTTGATCAAGTTTCCATTCCTAAGGATCTCATGTTTGCTACATCTGAGGAGCTGTTTGACTTCATTGCTTTGGGGCTAGCGAAATTCGCAGCCAAGGAAGATGGTAGATTTCATTTGCCACCAGGCAGGAAGAGAGAGATCGGGTTCACGTTTTCGTTTCCTGTGAAGCAGACATCTATTGATTCAGGCATACTCATCAAGTGGACCAAGGGTTTTGCAGTATCTGGAACAGCAGGAAGAGATGTGGTTGCTTGTCTGAATGAGGCTATGGAAAGGCAAGGACTAGATATGCGAGTTTCGGCATTGGTGAATGATACTGTGGCGACATTAGCCGGAGCAGAATACTGGGACAATGATGTCATGGTTGCTGTCATTTTGGGTACTGGAACTAATGCTTGCTATGTTGAGAAGATCAGTGCTATTCCCAAGTTACAGGGCCATGTCTCTTCTTCTGGGAAAATGATCATCAGTACTGAGTGGGGGGCTTTCTCAAAGGGTCTCCCTTTAACTGAGTTTGATAGAGAAATGGATGCTGCCAGCATCAATCCTGGTCAGCAGATCTTTGAAAAGACAATCTCAGGAATGTATCTAGGTGAAATTGTGAGAAGAGTGCTGCTGCAAATGGCTGAAGAAGGAGGTTTGTTTGGAAAAGCAATCCAACAAAAACTGTCTATGCCTTTCATACTCGGGACCCCAGATCTATGTTCCATGCAGCAGGATAATTCTGGTGATTTACAAGCCGTTGGCTCCCTTCTCTATGATAAAGCAGGGGTTGAGTCCAACATAAGTGATAGAAAAACAGTTTTAGAGGTCTGTGACACTATTGTGAAGCGTGGTGGAAGCCTAGCTGGTGCAGGAATTGTGGGGATTCTGCAGAAAATGGAAGAGGACTCAAAAGGCCTCATTTGTGGGAAGAGAACTGTTGTTGCCATTGATGGGGGCTTGTATGAGAACTATCCTCAATATAGAGCTTACTTGGTAGATTCAGTCAAGGGTCTGCTAGGAACAGAGAAGTCAAACAATGTGGTGATAGAGCTTTCAAAAGATGGATCTGGCATTGGGGCTGCACTATTAGCAGCTTCTAATTCCATGTACAAGCAACACTTTTAG 1488 0.4691 MSISLSVSVTSAAGISHSRSRRRLTVALRSPDTVSVGPARILTKLKHECATPLPLLQQVATNMSAEMRAGLAGDGGPGLPMIPTFVDSLPTGNERGLFFALDLGGTNFRVLRVQLGGEDERVIATEFDQVSIPKDLMFATSEELFDFIALGLAKFAAKEDGRFHLPPGRKREIGFTFSFPVKQTSIDSGILIKWTKGFAVSGTAGRDVVACLNEAMERQGLDMRVSALVNDTVATLAGAEYWDNDVMVAVILGTGTNACYVEKISAIPKLQGHVSSSGKMIISTEWGAFSKGLPLTEFDREMDAASINPGQQIFEKTISGMYLGEIVRRVLLQMAEEGGLFGKAIQQKLSMPFILGTPDLCSMQQDNSGDLQAVGSLLYDKAGVESNISDRKTVLEVCDTIVKRGGSLAGAGIVGILQKMEEDSKGLICGKRTVVAIDGGLYENYPQYRAYLVDSVKGLLGTEKSNNVVIELSKDGSGIGAALLAASNSMYKQHF* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3320 495 PANTHER HEXOKINASE 19 491 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Lja5g3320 495 SUPERFAMILY Actin-like ATPase domain 245 489 IPR043129 -
Lja5g3320 495 PRINTS Hexokinase family signature 248 262 - -
Lja5g3320 495 PRINTS Hexokinase family signature 471 487 - -
Lja5g3320 495 PRINTS Hexokinase family signature 99 115 - -
Lja5g3320 495 PRINTS Hexokinase family signature 394 416 - -
Lja5g3320 495 PRINTS Hexokinase family signature 173 198 - -
Lja5g3320 495 PRINTS Hexokinase family signature 225 241 - -
Lja5g3320 495 PRINTS Hexokinase family signature 312 334 - -
Lja5g3320 495 ProSiteProfiles Hexokinase domain profile. 36 486 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Lja5g3320 495 CDD NBD_sugar-kinase_HSP70_actin 100 263 - -
Lja5g3320 495 Gene3D - 84 485 - -
Lja5g3320 495 ProSitePatterns Hexokinase domain signature. 173 198 IPR019807 GO:0004396|GO:0005524|GO:0006096
Lja5g3320 495 PANTHER HEXOKINASE-LIKE 1 PROTEIN-RELATED 19 491 - -
Lja5g3320 495 SUPERFAMILY Actin-like ATPase domain 38 243 IPR043129 -
Lja5g3320 495 Pfam Hexokinase 43 241 IPR022672 GO:0005524|GO:0005975|GO:0016773
Lja5g3320 495 Gene3D - 62 474 - -
Lja5g3320 495 Pfam Hexokinase 248 486 IPR022673 GO:0005524|GO:0005975|GO:0016773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3320 Lja-Chr5 64378281 64382060 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3320 5 64378281 64382060 Lja5g3320 5 64378281 64382060 ECH