Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3313 ATGGGAGTTCCGGCGTTCTACCGGTGGCTGGCGGAGAAATATCCCATGGTAATCGTCGACGCCGTCGAGGAGGAGCCTGTTGAAATTGAAGGCGTTCAAATCCCCATCGACACCAGCAAGCAGAACCCTAACAACATCGAATACGATAACCTCTATCTCGACATGAACGGCATCATTCACCCTTGCTTCCACCCCGAAGATAGGCCATCTCCTACCTCTTTCGATGAGGTGTTTGAGTGTATGTTTGATTACATTGATAGGCTATTTGTCATAGTTCGGCCTCGGAAGCTGCTCTACATGGCTATTGACGGTGTTGCGCCGAGGGCTAAGATGAATCAGCAACGTTCGAGGCGGTTTAGGTCAGCCAAAGACGCATCTGATGCGGCTGCTGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAGGGAGGGCAGAAAGCTTCCTCCAAAAGAAGAGTCGCAGGTCTTCGATTCGAATGTCATTACACCTGGAACTGAATTTATGGCTGTTTTGTCGATTGCACTTCAGTACTATGTTCATCTTAGGTTGAACAATGATCCTGGTTGGAAAAATATTAAGGTTATTCTTTCTGATGCAAATGTCCCTGGCGAAGGGGAGCATAAGATTATGTCCTATATTCGCTTGCAAAGAAATCTTAAAGGCTATGATCCAAATACACGACATTGCCTGTATGGTTTGGATGCTGATTTGATTATGTTGGCTCTGGCTACCCATGAAGTCCATTTCTCAATTCTTAGGGAGGTTGTATTTACTCCTGGACAAGACAAATGCTTCATATGTGGCCAAATGGGTCATATGGCTGCAGCCTGTGAAGGAAAGGCAAAAAGGAAAGCAGGAGAGTTTGATGAAAAAGGAGATGCTAATGTGGCTAAAAAACCCTACCAGTTTCTAAATATTTGGGTTCTGAGGGAATATCTGGAATATGAGATGAGAATGCCTAATGTTCCATTCAAGATTGATTTTGAACGCATTGTGGATGATTTTATCTTCATCTGTTTTTTTGTCGGCAATGATTTCCTACCACATATGCCTACTTTAGAAATTCGTGAGGGTGCAATTAACTTGTTGATGGCAGTATACAAGAAGGAACTTGGGGCAATGGGTGGTTATTTAACTGATGGAAGCAAGCCAAATTTGAGCAGGGTGGAACATTTTATTCAGGCTGTTGGATCTTATGAAGATACAATATTCCAGAAAAGAGCTAGATTGCATCAGCGACAAGCAGAAAGAATTAAGCGTCAAAAGGCACAAGCAAGAGGAGATGATGCTCAACCTCAAGCTCAACCTGAGACTCTTGTTGCAATTTCAAAATTCCATGGTTCTCGTCTGGCTTCAGCTCCAACGCCTTCACCATTTCAAGCACCTGGGCGGTATGATTCTCATGCGTCTGCATCAGTTAGAAAAGGCAATAAAGAAGTCTTTGAGAAGCCCCCTAAAGCTGCTAGGTTGTCTTCCGGAGCATCTGTTGCTGCTGCCATTGTTGAAGCTGAGAATAGTCTTGAAATAGATATTCAAGATAACAAGGATGATTTGAAAACAAAGCTGAAGGAAATACTTCGAGAGAAATCTGATGTATTCAACTCAAAAACTACTGAAAAGGACAAGATTAAGCTGGGAGAACCAGGCTGGAAAGAGAGGTATTATGAGGAAAAATTTTCTGCTAAAACTCTTGAGGAACTGGAAGCTATACGGAGAGATGTTGTCTTGAAATACACTGAAGGTCTTTGTTGGGTGATGCACTATTATTACGAGGGTGTTTGTTCTTGGAATTGGTTTTATCCTTATCATTATGCTCCCTTTGCGTCTGATCTCACGGGCCTTGGTGAGCTTAATATTAGCTTTAATCCGGGTACTCCGTTCAAACCATTTGATCAGCTTCTAGGGGTTTTTCCTGCTGCAAGCTCTCATGCACTTCCTGAGCCATATAGGAAACTTATGACAGATCCCAACTCACCAATTATTGATTTTTATCCACTTGATTTTGATGTGGACATGAATGGCAAACGCTTTGCCTGGCAGGGTATCGCGAAGTTGCCTTTTATTGATGAAACACGTCTTCTTACGGAAGTTCGGAAAATTGAAAACTTGTTAACACCGGAGGAAAAGCGACGAAATGCTGTGATGTTCGACTTGCTTTTTGTGAATTCCTGTCATCCTCTATCTGCATGCATAAGTACACTTGACAACAAATGCAGAAACATGTCAAACAATGAACGTGCTGAGGTCAAGGAAAAAATCGATCCCATGGAAAGGTATACATGCAGTGATGGAATGAATGGTTACATATCCTTGTGTGCTGGTGAACCTTGCCCTCCTATCTTTAGGTCTCCTGTTACAAGCATGGAAGATATCATGGACAACCATGTCATATGTGCAATTTATAGACTCCCAGATGCGCATAATCACATTGCCCGACCACCAGAGGGAGTTAAATTTCCAAAAAAGATCGTGACAGTTGGGGATCTACAACCTGAACCTGTTTTGTGGCATGAAGATTCTGGTAGGAGGAGATATGAGGATAGTCGGAGGAAAAACCCTCCAGGATCTATTTCTGGTCGGGAGCTTGGAGAGGCAGCACATAGACTGGTTGTCAATTCCTTACAGGTCAAGGTTGATGAAAATGGTTACCGTCGTCCTGCAAATGGACCCCCCATGTCTTATGCTGCACCAATGGGTCATCAGCAACCATTGCCTTCCTATGGTTATGAATCGCGCCCAGGATATATTGCAAGACCGCCACCTCTGTCAGCTCCACCCGTCCACGGTCAACCACCGTACATACCTTATAATGCTGCACCACTTTTGTTAGCTGCAGCTATCCTAGGTCAACAACCGTACGTACCTTATAATGCTGTCCCTGCAGCTCCGCCATATGGTTATAACCAACCACACCCACCGCATATGGTGTATGATCCTGTTCAATCAAATTCTTATGAAGGAAATGATCATCAACACCCTATATCACATCCTTATGTAAGAAATGATCATCAACCGAGAGGAGGAAGTGCAAGGCATAGATACAATTCACAAGGTGCATATGCTAGTCAGCATCACGAATATCCTAGTCAGCATGGTCGCCACCAGAACTGGACTCCCCGGAGTAACCCCAGTGGCCCTAGGGGATCTGGTCAACATTCGACCAATCAATACGCTCATTTAGATAGAAGAGCAAACAGGAAGCCAATGCCACCACCTGATTATAGTCGCAGGTAA 3231 0.4383 MGVPAFYRWLAEKYPMVIVDAVEEEPVEIEGVQIPIDTSKQNPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFVIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRSAKDASDAAAEEARLREEFEREGRKLPPKEESQVFDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLKGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQDKCFICGQMGHMAAACEGKAKRKAGEFDEKGDANVAKKPYQFLNIWVLREYLEYEMRMPNVPFKIDFERIVDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKELGAMGGYLTDGSKPNLSRVEHFIQAVGSYEDTIFQKRARLHQRQAERIKRQKAQARGDDAQPQAQPETLVAISKFHGSRLASAPTPSPFQAPGRYDSHASASVRKGNKEVFEKPPKAARLSSGASVAAAIVEAENSLEIDIQDNKDDLKTKLKEILREKSDVFNSKTTEKDKIKLGEPGWKERYYEEKFSAKTLEELEAIRRDVVLKYTEGLCWVMHYYYEGVCSWNWFYPYHYAPFASDLTGLGELNISFNPGTPFKPFDQLLGVFPAASSHALPEPYRKLMTDPNSPIIDFYPLDFDVDMNGKRFAWQGIAKLPFIDETRLLTEVRKIENLLTPEEKRRNAVMFDLLFVNSCHPLSACISTLDNKCRNMSNNERAEVKEKIDPMERYTCSDGMNGYISLCAGEPCPPIFRSPVTSMEDIMDNHVICAIYRLPDAHNHIARPPEGVKFPKKIVTVGDLQPEPVLWHEDSGRRRYEDSRRKNPPGSISGRELGEAAHRLVVNSLQVKVDENGYRRPANGPPMSYAAPMGHQQPLPSYGYESRPGYIARPPPLSAPPVHGQPPYIPYNAAPLLLAAAILGQQPYVPYNAVPAAPPYGYNQPHPPHMVYDPVQSNSYEGNDHQHPISHPYVRNDHQPRGGSARHRYNSQGAYASQHHEYPSQHGRHQNWTPRSNPSGPRGSGQHSTNQYAHLDRRANRKPMPPPDYSRR* 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3313 1076 Coils Coil 407 427 - -
Lja5g3313 1076 MobiDBLite consensus disorder prediction 117 151 - -
Lja5g3313 1076 PANTHER 5'-3' EXORIBONUCLEASE 1 1050 - -
Lja5g3313 1076 MobiDBLite consensus disorder prediction 969 1076 - -
Lja5g3313 1076 Coils Coil 122 142 - -
Lja5g3313 1076 Gene3D - 616 713 - -
Lja5g3313 1076 MobiDBLite consensus disorder prediction 450 484 - -
Lja5g3313 1076 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Lja5g3313 1076 MobiDBLite consensus disorder prediction 1058 1076 - -
Lja5g3313 1076 MobiDBLite consensus disorder prediction 992 1008 - -
Lja5g3313 1076 Gene3D - 141 378 - -
Lja5g3313 1076 Gene3D - 1 135 - -
Lja5g3313 1076 MobiDBLite consensus disorder prediction 837 853 - -
Lja5g3313 1076 PANTHER 5'->3' EXORIBONUCLEASE 1 1050 IPR027073 -
Lja5g3313 1076 MobiDBLite consensus disorder prediction 113 152 - -
Lja5g3313 1076 PIRSF Exonuclease_Xrn2 948 1072 IPR017151 GO:0004534|GO:0005634|GO:0006139
Lja5g3313 1076 PIRSF Exonuclease_Xrn2 1 914 IPR017151 GO:0004534|GO:0005634|GO:0006139
Lja5g3313 1076 MobiDBLite consensus disorder prediction 837 861 - -
Lja5g3313 1076 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Lja5g3313 1076 MobiDBLite consensus disorder prediction 470 484 - -
Lja5g3313 1076 CDD PIN_XRN1-2-like 51 312 - -
Lja5g3313 1076 Pfam Xrn1 helical domain 324 828 IPR041412 -
Lja5g3313 1076 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Lja5g3313 1076 MobiDBLite consensus disorder prediction 1031 1057 - -
Lja5g3313 1076 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Lja5g3313 1076 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Lja5g3313 1076 Coils Coil 507 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3313 Lja-Chr5 64304123 64316533 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3313 5 64304123 64316533 Lja5g3313 5 64304123 64316533 ECH