Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3309 ATGGCTTCCGTAGAAGAAAAGATTAAAACTGGAGGAGTAGGAGTAGGTGTTGGTGTTGGAGTTGTTGGGGGTCAAACTCAAACTCAAAATCTTGTTGCTGAGATGAAACTGCTGAAGGATTGTGGGGTGAGAAGGACTTTGAACTCAGAGTTATGGCATGCTTGTGCTGGCCCTCTTGTATCATTGCCTCAAGTTGGGAGCCTTGTGTATTACTTCCCTCAGGGACATAGTGAGCAGGTGGCAGCTTCTACTAGAAGAACAGCAACCTCACAGATTCCAAATTATCCTAGTCTCCAATCTCAGTTACTGTGCCAAGTTCAAAATGTCACACTACATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGAGTCTCCAACCAGTGAATTCTGAAAAAGAAGTATTTCCTATATCTGATTTTGGGACAAAGCAAAGTAAACATCCCAGTGAGTTTTTCTGCAAAACTTTGACTGCTAGTGACACCAGCACACATGGTGGCTTTTCAGTTCCGCGAAGGGCGGCAGAGAAGCTCTTTCCTCAATTGGATTACACAATTCAGCCCCCAACACAAGAGCTTGTGGTTCGTGATTTGCATGACAATACCTGGACATTTCGACATATATACCGGGGTCAGCCAAAGAGACACCTTCTCACCACAGGGTGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAGAGCAGGTGATTCTGTTCTTTTTATCAGGGATGAGATATCGCAATTGCGAGTTGGTGTGAGGCGTGCTAATCGTCAACAGACAACACTGCCGTCATCAGTACTCTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGCAGTCCATTCACTATTTTCTACAATCCTAGGGCATGTCCGTCAGAGTTTGTTATTCCGCTGGCTAAATACAGAAAGGCTGTGTATGCGAGTCAGCTCTCAGTTGGCATGAGGTTTGGTATGATGTTTGAGACAGAGGAATCGGGTAAGCGCAGATATATGGGCACAATTGTTGGTATCAATGATGTGGATCCTTTGAGGTGGCCTGGTTCTAAGTGGCGAAATATTCAGGTGGAGTGGGATGAACCAGGGTGTGGTGATAAGCAGAATAGAGTTAGTGTATGGGATATTGAGACTCCTGAAAGCCTTTTCATCTTTCCTTCTTTGACTTCAAGTCTGAAAAGGCCATTACAATCTGGACTTTTAGAAAATGAGTGGGGAACTTTGTTAAGAAAACCTTTTATAAAAGCTCCTGAAAGTGGAGCAATGGAGCTCTCAAGCTCAATACCAAATCTATACCAAGAACAACTCATGAAAATGCTTTTTAAACCCCAAGCTGTTAACAACAATGGAGCTTTTCCTTCTCTCATGCAACAAGAATCTGCTGCTACAAGAGGTCCCTTGCAAGTAGATAACCAAAATGTTCATCTTGCAAGTACAGGGAGCATGACACTAAAAAATCCATGCTCACAATCTTCCCAAAACTCTCAAACCACACTGCTGAAAAGTGATCAGCCTGAAAAATTGCATCCTCAGCCCAGAATTGACAATCACCTAACTTCTGGAACAGTCACTGACAACAAGTCAAGGTTAGAATCTGAGGTGTTAGATCATGTGTTGGACTTTCCTTCCATGGAAGGATGCAAGATTGAAAAAATGGTCACAAATCCTATTAACCCTCAAAACCTAGCAAGCCACTTGACAATCAATAATCAAAACCAGAATCCATTACTCCCACAATCCAGTACATGGCCTATGCAGCACACTCAGTTAGAATCATCCTTATCTTATCCCCAAGTTATTGACATGTCCCAATCTGATTCGGCTATTGTGAATGGCACACTTCCGCAGCTAGACATTGAAGAATGGATGGCATATTCTTCTTGCCAACCTTTTGCTGGACAAAATAGATCGAATGGGCCTTTCTCAGATTTTCAAGAACATGCCTCACTTCAAGCTCAAGTAGTGAATAATCCCTCTTTAACTTCAACTAACCAAGAAGTGTTAGATCATTATGTCAAGAATTTGAAGTTTTTCTCCCAAGCTGATCAACTAACATCCATCTATGGCTTCAACGGTATATCTAGTTCAAACAACTTGAGGGATCTCTCATCTGAAAGCAATAACCAAAGTGAAATTTGTGTGAATGTTGATGTTAGTAACAGTGTAAATACCACAACAGTTGATCCTTCTACTACTTCAAGTACCATTTTGGATGAGTTTTGCACAATGAAAGAGAGGGACTTTCAGCATCCACAAGAGTGCATGGTGGGAAACTTGAGTTGCAGCCAGGATGGCCAGTCTCAGATAACCTCAGCAAGTCTAGCAGAGTCACATGCCTTTTGTCTGAGAGACAACTCAGGTGGCACATCTTCAAGCCATGTTGATTTTGATGATAGCAGTCTTCTGCAGAATAACTCATGGCAGCAAGGTTCTACTCCCATCAGAACCTACACCAAGGTGCAAAAGGCAGGTTCTGTGGGAAGATCAATTGATGTCACTACTTTCAAGAACTATGAGGAGTTGATTCGCGCAATTGAATGCATGTTTGGACTCGATGGTTTGTTGAATGACACTAAAGGTTCCGGGTGGAAATTGGTGTATGTAGATTATGAGAGTGATGTTCTACTTGTAGGTGATGATCCTTGGGAAGAATTTGTGGGGTGTGTCCGGTGTATCAGAATTTTATCACCTTCAGAAGTTCAACAGATGAGTGAAGAGGGCATGAAGCTTCTGAATAGTGGAGCCTTGCAAGGGATCAATGTTTGA 2784 0.4267 MASVEEKIKTGGVGVGVGVGVVGGQTQTQNLVAEMKLLKDCGVRRTLNSELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAASTRRTATSQIPNYPSLQSQLLCQVQNVTLHADKETDEIYAQMSLQPVNSEKEVFPISDFGTKQSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPQLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEISQLRVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAVYASQLSVGMRFGMMFETEESGKRRYMGTIVGINDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWDIETPESLFIFPSLTSSLKRPLQSGLLENEWGTLLRKPFIKAPESGAMELSSSIPNLYQEQLMKMLFKPQAVNNNGAFPSLMQQESAATRGPLQVDNQNVHLASTGSMTLKNPCSQSSQNSQTTLLKSDQPEKLHPQPRIDNHLTSGTVTDNKSRLESEVLDHVLDFPSMEGCKIEKMVTNPINPQNLASHLTINNQNQNPLLPQSSTWPMQHTQLESSLSYPQVIDMSQSDSAIVNGTLPQLDIEEWMAYSSCQPFAGQNRSNGPFSDFQEHASLQAQVVNNPSLTSTNQEVLDHYVKNLKFFSQADQLTSIYGFNGISSSNNLRDLSSESNNQSEICVNVDVSNSVNTTTVDPSTTSSTILDEFCTMKERDFQHPQECMVGNLSCSQDGQSQITSASLAESHAFCLRDNSGGTSSSHVDFDDSSLLQNNSWQQGSTPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGINV* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3309 927 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja5g3309 927 PANTHER AUXIN RESPONSE FACTOR 5 34 925 - -
Lja5g3309 927 SMART B3_2 153 255 IPR003340 GO:0003677
Lja5g3309 927 CDD B3_DNA 152 253 IPR003340 GO:0003677
Lja5g3309 927 ProSiteProfiles PB1 domain profile. 821 905 IPR000270 GO:0005515
Lja5g3309 927 MobiDBLite consensus disorder prediction 487 531 - -
Lja5g3309 927 Gene3D - 816 910 - -
Lja5g3309 927 SUPERFAMILY DNA-binding pseudobarrel domain 142 282 IPR015300 -
Lja5g3309 927 ProSiteProfiles B3 DNA-binding domain profile. 153 255 IPR003340 GO:0003677
Lja5g3309 927 Gene3D - 317 389 - -
Lja5g3309 927 Pfam B3 DNA binding domain 153 254 IPR003340 GO:0003677
Lja5g3309 927 MobiDBLite consensus disorder prediction 487 510 - -
Lja5g3309 927 Pfam AUX/IAA family 818 908 IPR033389 -
Lja5g3309 927 Gene3D - 151 254 IPR015300 -
Lja5g3309 927 SUPERFAMILY CAD & PB1 domains 834 900 - -
Lja5g3309 927 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 925 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3309 Lja-Chr5 64114225 64120921 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja5g3309 AUX_IAA 3e-11 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3309 5 64114225 64120921 Lja5g3309 5 64114225 64120921 ECH