Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3306 ATGGTTTCCGATAGTAGCCCTCATTCTCCTCCAGATGATGGATTGAAGAAGAAGCTCGATGATGGATTGAAGAAGAAACTCGAGTACTTGTCGTTGGTATCAAAGGTGTGCACTGAGTTGGAATCTCACACCGGCACCGGCGACAAGGTCCTCGCCGAGTTCATCACCGAGTTGGGTCGCGACTCCGAGAACGTCGAGGAATTTGATGCCAAGTTGAAGGAGAATGGTGCTGAGATGCCTGATTACTTCGTCAAAACACTCCTCACCATCATTCACGCCATTCTCCCACCGAAACCGAGGAAGGAGAAGGAGAAGGAGAGGGGTGGTGCTGCCGGTGGGAAGACTAAGTTCAAGGCTCTTGCTATAGCGGATGATAGGGACCGTGTCAAGGAGCTTCAGAAGGAGATTGAGAGTGAGGCCAGGCAGAAAGAACCGGCAGATGATGATGATAGATACGTGGATAGGGATAGAAGAGATAGACGCAGAGATCATCGGTATGGTGGAGATGACAGAAGGGATTATAGAAGGGGAAATGGTAGAGATAGAGATAGAGAGAGGGATAGGGATAGGGATGTGGACAGAGAGAGAGATAGAGATCGAGGGAGAGACAGGTATGATAGGCGTAGGAGAGATGGGTATGAAGAGGATGAGCGTGGAAGGGAGGATGATGAAGGGAGAGGTCGGAGGGATTCAAGACATGGGTATGAAGAGGATGAGCGCGGAAGGGGGGAGAATGGCGAAGGGAAAGGTCGTAGCGATTCAAGACATGGGTCTGGTGAGCCTGAACTGTATATGGTTTATAAAGGTAGAGTGTCAAGGGTTATGGATACTGGCTGCTTTGTTCAGTTGGATGATTTTAGAGGGAAGGAGGGTTTGGTGCATGTTTCTCAGATTGCTACTAGAAGGATTACTAATGCCAAGGATGTTATCAAGCGAGATCAGGAGGTTTATGTGAAGGTGATATCGGTTTCTGGTAACAAGTTGAGTCTTGCCATGAGGGATGTTGATCAGCATACAGGGAAGGATCTTCTTCCGTTAAAGAAGAGCTCCGAGGATGATGCTCCGAGGATGAATCCGCAGGGCTTGAGGGATGGGCCGGTTTCCAGGACGGGGCTTTCTGGGATAAGGATTGTGGAGGAGGATTCTGTTGGTGGTTCTTCGCGGAGGCCTTTGAAGAGGATGAGCTCTCCTGAGATATGGGAAGCGAAACAGTTGATTGCTTCGGGAGTTATGAGTGTTTCGGAGTATCCGACTTATGATGAGGAGGGAGATGGGTTGTTGTATCAGGAAGAAGATGCTGAGGAAGAGCTCGAGATTGAGATGAATGACGACGAACCTGCCTTCTTGCAAGGGCAGAGCAGGTACTCAATGGATATGTCTCCTGTTAAGATTTTTAAGAATCCAGAAGGCTCTCTGGGTCGTGCTGCGGCGCTCCAGTCTGCACTTATAAAGGAGCGGAGGGAAGTAAGAGAGCAGCAACAGCGTACAATGCTTGATTCAATTCCAAAAGATCTCAATCGTCCTTGGGAAGACCCTATGCCAGAGACGGGTGAAAGACATCTTGCCCAGGAGCTCAGGGGTGTTGGTTTATCAGCCTATGATATGCCTGAATGGAAGAAGGATGCCTATGGGAAAACCATTACTTTTGGGCAGAGGTCAAAGCTTTCTATTCAGGAGCAGAGGCAGAGTTTGCCAATTTACAAGTTGAAAAAAGAATTGATTCAGGCAGTCCATGATAATCAGCTGCTGGTGGTGATTGGTGAAACTGGTTCAGGTAAAACTACTCAGGTCACACAGTATCTTGCTGAAGCGGGTTACACCACAAGAGGTAAAATTGGATGTACTCAACCCCGTAGGGTGGCTGCGATGTCAGTTGCAAAGAGAGTTGCAGAAGAGTTTGGTTGTAGATTAGGAGAGGAAGTTGGTTATGCCATTCGTTTTGAGGATTGCACTGGACCTGATACTGTAATCAAGTACATGACGGATGGTATGCTCCTTAGGGAAATATTGGTTGATGAGAGTCTATCACAGTATTCTGTTATCATGCTTGATGAAGCCCATGAAAGAACAATTCATACCGATGTTCTTTTTGGACTCCTGAAGCAGCTAGTGAAGCGTAGACCTGAATTGCGATTGATTGTCACATCTGCTACTCTGGATGCTGAGAAGTTTTCAGGATATTTCTATAACTGTAACATCTTCAGAATTCCTGGGAGAACTTTTCCTGTGGAGGTACTTTATACTAAACAGCCAGAAAGTGATTACCTAGATGCATCTTTAATCACTGTTCTACAGATCCACTTGACAGAACCTGAAGGGGACATTCTTCTATTTTTGACTGGTCAAGAGGAGATTGATTTTGCTTGTCAGTCTCTCTATGAGAGAATGAAGGGGTTAGGTAAGAATGTACCAGAGCTGATTATTTTGCCTGTTTATAGTGCCCTTCCTAGTGAAATGCAATCTAGGATATTTGATCCTGCTCCTCCTGGGAAAAGGAAAGTAGTAGTGGCTACTAACATTGCTGAGGCTTCCTTGACTATTGATGGAATATTTTATGTCATTGATCCTGGATTTGCGAAGCAAAATGTTTATAACCCCAAGCAAGGTCTTGATTCTTTGGTCATAACTCCAATCTCTCAAGCATCAGCCCAACAAAGAGCTGGACGTGCAGGGCGCACTGGACCTGGAAAGTGTTATCGTCTCTATACTGAGAGTGCATATAGGAATGAGATGTCTCCTACTTCAATTCCAGAGATTCAAAGGATAAATTTGGGGACGACTACTCTTAATATGAAAGCTATGGGGATAAATGATCTTCTGTCCTTTGATTTTATGGATCCGCCATCACCCCAAGCTCTTATTTCTGCCATGGAGCAGTTGTACAGTCTTGGAGCATTGGATGAAGAGGGCCTTTTAACCAAATTGGGGAGGAAAATGGCAGAATTTCCTTTGGATCCACCGTTGTCCAAGATGCTGCTTGCCAGCGTAGACCTTGGATGCAGTGATGAGATTTTGACCATAATTGCCATGATCCAGACAGGCAATATTTTTTACAGGCCCAGGGAAAAGCAAGCCCAAGCAGATCAAAAGAGGGCAAAGTTTTTCCAGCCCGAGGGTGACCATCTTACACTACTTGCTGTTTATGAGGCTTGGAAAGCTAAGAATTTTTCTGGGCCATGGTGTTTTGAGAATTTCGTTCAATCTCGATCCTTGAGAAGAGCACAGGATGTTAGGAAACAGCTTCTTACCATCATGGATAAGTACAAGTTGGATGTTGTAAGTGCTGGAAAAAACTTCACGAAGATCAGGAAGGCTATCACTGCAGGTTTCTTCTTTCATGCAGCTAGGAAGGACCCTCAAGAAGGTTACAGAACTCTAGTTGAGAATCAGCCTGTTTATATCCATCCAAGCTCAGCTTTGTTCCAGAGACAGCCAGATTGGGTCATATACCATGAACTTGTGATGACTACTAAGGAATATATGCGTGAGGTCACCGTCATAGACCCCAAATGGCTTGTTGAATTGGCTCCAAGGTTCTTCAAAGTGGCTGATCCTACAAAGATGAGCAAGCGAAAGCGTCAAGAGCGTATAGAACCACTTTATGATAGATATCACGAACCAAACTCGTGGCGTTTGAGCAAGCGCCGCGCATGA 3654 0.4573 MVSDSSPHSPPDDGLKKKLDDGLKKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRDSENVEEFDAKLKENGAEMPDYFVKTLLTIIHAILPPKPRKEKEKERGGAAGGKTKFKALAIADDRDRVKELQKEIESEARQKEPADDDDRYVDRDRRDRRRDHRYGGDDRRDYRRGNGRDRDRERDRDRDVDRERDRDRGRDRYDRRRRDGYEEDERGREDDEGRGRRDSRHGYEEDERGRGENGEGKGRSDSRHGSGEPELYMVYKGRVSRVMDTGCFVQLDDFRGKEGLVHVSQIATRRITNAKDVIKRDQEVYVKVISVSGNKLSLAMRDVDQHTGKDLLPLKKSSEDDAPRMNPQGLRDGPVSRTGLSGIRIVEEDSVGGSSRRPLKRMSSPEIWEAKQLIASGVMSVSEYPTYDEEGDGLLYQEEDAEEELEIEMNDDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQLLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDESLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFYNCNIFRIPGRTFPVEVLYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAQQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGTTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA* 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3306 1217 Pfam DEAD/DEAH box helicase 570 720 IPR011545 GO:0003676|GO:0005524
Lja5g3306 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 554 1087 IPR027417 -
Lja5g3306 1217 SMART S1_6 262 333 IPR022967 -
Lja5g3306 1217 Coils Coil 122 142 - -
Lja5g3306 1217 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 762 935 IPR001650 -
Lja5g3306 1217 PANTHER - 99 1217 - -
Lja5g3306 1217 MobiDBLite consensus disorder prediction 131 258 - -
Lja5g3306 1217 CDD SF2_C_RHA 741 902 - -
Lja5g3306 1217 Pfam Helicase conserved C-terminal domain 764 894 IPR001650 -
Lja5g3306 1217 MobiDBLite consensus disorder prediction 131 261 - -
Lja5g3306 1217 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1102 1177 IPR011709 -
Lja5g3306 1217 ProSiteProfiles S1 domain profile. 264 333 IPR003029 GO:0003676
Lja5g3306 1217 Gene3D - 536 739 IPR027417 -
Lja5g3306 1217 MobiDBLite consensus disorder prediction 95 119 - -
Lja5g3306 1217 CDD DEXHc_DHX8 559 737 IPR044762 GO:0000398|GO:0003724|GO:0005524
Lja5g3306 1217 MobiDBLite consensus disorder prediction 341 370 - -
Lja5g3306 1217 Pfam Helicase associated domain (HA2) 956 1044 IPR007502 GO:0004386
Lja5g3306 1217 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 574 737 IPR014001 -
Lja5g3306 1217 SMART ultradead3 562 746 IPR014001 -
Lja5g3306 1217 SMART ha2_5 955 1045 IPR007502 GO:0004386
Lja5g3306 1217 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 679 688 IPR002464 -
Lja5g3306 1217 MobiDBLite consensus disorder prediction 96 112 - -
Lja5g3306 1217 Pfam S1 RNA binding domain 265 326 IPR003029 GO:0003676
Lja5g3306 1217 Gene3D - 740 914 IPR027417 -
Lja5g3306 1217 MobiDBLite consensus disorder prediction 341 358 - -
Lja5g3306 1217 SUPERFAMILY Nucleic acid-binding proteins 263 340 IPR012340 -
Lja5g3306 1217 SMART helicmild6 790 894 IPR001650 -
Lja5g3306 1217 Gene3D - 939 1038 - -
Lja5g3306 1217 CDD S1_DHX8_helicase 264 340 - -
Lja5g3306 1217 Coils Coil 475 495 - -
Lja5g3306 1217 PANTHER ATP-DEPENDENT RNA HELICASE 99 1217 - -
Lja5g3306 1217 Gene3D - 259 344 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3306 Lja-Chr5 64089276 64093794 Dispersed/Transposed