Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3300 ATGGAAGGTTCTGATCAATTTGGTGTTCAACGAAATAGTTATGTATTGGGTTCAATTCCTAGACCCACAAACCGATTGAGTGCTATTCCTATGCCTAACAATCAAATGGGTTATCCTCCTGAGAATCACAAACCCTCTGGGATACCACCTTCTCACCCTAATACCAATTCCTCACCCTCATCTCCTTATCCTCAATTTATGAACCCTCAATTCAATTCTGGTCCCCAGAGGTTGAGTTCTCCCAATTTGAGTCCAGGGTCATCCTCATCATCCCATTCTAGGTCTTTGTCCCAACCCTCTTTTTTCTCCCTAGATTCCTTGCCCCCATTGAGCCCTTCACCTTATAGAGAGCCCTCACCAGATGTGTCTATGGAGGAAAGCTTGGCTACCTCTCATGCCCCTTTGCCGAACCGCGGTCACGCGGTTCAGCTTGGCCAGTGTCTTCCCCCGCGTAAAGGACACAGGCGCTCTAGCAGTGATTCCCCTTTAGGAATCTCGGATTATGTTCAGTCTGTACCTCAGTTTTTCCCTCCTGGGATTTGGAGTGATCACCGCAATTCAACTTCTAGAGGAGAAAACTTAAACTCTCGTTCTGAGAAGCCAATTCAGTTGGTGTTGAAGGCGCCGAGTAATGATTCGGGTAATGGATTTAGTGGTGGTGCTATGGATGGGAAGAAAAAGGATGATGACCTGGATGATTTGTTTAGCGCATACATGAATTTGGACAACATTCAGAATATGAGCTTTTCTGGTGTCGAAGATAAGGATTTGGATAGCAGGACTAGTGGTTCTAAGACTGTTGAAAGCAGCGACAATGAAGTTGACAGTCATGCTAATGGAAAAGCAACCGCTGCTCGTGCTCTGGGGGCGAGTTCGAGCTGTTCAGAAGAGAGGAGGGAAGGAATCAAGAGGAGTTCTAATGGAGATATGGCACCCGGTGTCCGGCATCGGAGAAGTTTTTCGTTGGACAGTTCCATAGGGAAATTTCATCTTGAAGATGAATCACCTAAGCTTCCTCCTTTGCAAAATCTAGTTGGTCAGCTTTCACCTAGTAATTCAATAGATGGTAAAACATCAGGCATCGGCGTGGAGTTTGGAAATGGTGAATTCAGCTCAGACGAGCTAAAGAAAATAATGGAAAACGATAAACTTGCAGAAATTGCCACGTCTGATCCCAAGCGTGCAAAAAGGATTTTGGCTAATCGTCTATCAGCTGCTCGCTCAAAGGAGCGGAAGACACGTTACATTTCTGAATTGGAGCACAAGGTCCAAACTCTTCAGACAGAGACGACCACACTGTCCACTCAGTTTACCAAATTACAGATGGATCATATCGAGCTTAAAAATGAAAATAAGGAGTACAAGTTGAGGCTTCAATCCTTGGAACAGCAGTCTCAACTGAAAGATGCTCTGAATGAGACTCTGGATGCTGAGGTCCGGCGATTAAGGCGTACTGTTGCAGAAGTCGGTGGAGAGAACCTCCTCTCGAGTCTGATGGGTGAACAGCGCGCCATTAACCAGCAAATGGTCCATTTACAGCATCAGCCGCAGGGCCAGCAGAGGCATTTACAACTGCAAAACAGCCATTCTCAGGAAGAGAGACAGACTCAATCACAGCAGATTCAGCACAACAATGAATTCCAGTCCCAGCGCCAGAATGGCAAAGCTACTGCCTACTGA 1680 0.4619 MEGSDQFGVQRNSYVLGSIPRPTNRLSAIPMPNNQMGYPPENHKPSGIPPSHPNTNSSPSSPYPQFMNPQFNSGPQRLSSPNLSPGSSSSSHSRSLSQPSFFSLDSLPPLSPSPYREPSPDVSMEESLATSHAPLPNRGHAVQLGQCLPPRKGHRRSSSDSPLGISDYVQSVPQFFPPGIWSDHRNSTSRGENLNSRSEKPIQLVLKAPSNDSGNGFSGGAMDGKKKDDDLDDLFSAYMNLDNIQNMSFSGVEDKDLDSRTSGSKTVESSDNEVDSHANGKATAARALGASSSCSEERREGIKRSSNGDMAPGVRHRRSFSLDSSIGKFHLEDESPKLPPLQNLVGQLSPSNSIDGKTSGIGVEFGNGEFSSDELKKIMENDKLAEIATSDPKRAKRILANRLSAARSKERKTRYISELEHKVQTLQTETTTLSTQFTKLQMDHIELKNENKEYKLRLQSLEQQSQLKDALNETLDAEVRRLRRTVAEVGGENLLSSLMGEQRAINQQMVHLQHQPQGQQRHLQLQNSHSQEERQTQSQQIQHNNEFQSQRQNGKATAY* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3300 559 SUPERFAMILY Leucine zipper domain 393 449 IPR046347 GO:0003700|GO:0006355
Lja5g3300 559 MobiDBLite consensus disorder prediction 1 20 - -
Lja5g3300 559 MobiDBLite consensus disorder prediction 252 316 - -
Lja5g3300 559 MobiDBLite consensus disorder prediction 181 199 - -
Lja5g3300 559 PANTHER BZIP TRANSCRIPTION FACTOR 73 559 - -
Lja5g3300 559 CDD bZIP_plant_RF2 394 466 IPR044759 GO:0003700|GO:0006355
Lja5g3300 559 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 391 454 IPR004827 GO:0003700|GO:0006355
Lja5g3300 559 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 73 559 - -
Lja5g3300 559 Coils Coil 409 429 - -
Lja5g3300 559 MobiDBLite consensus disorder prediction 513 559 - -
Lja5g3300 559 SMART brlzneu 389 453 IPR004827 GO:0003700|GO:0006355
Lja5g3300 559 Coils Coil 444 481 - -
Lja5g3300 559 MobiDBLite consensus disorder prediction 48 107 - -
Lja5g3300 559 Pfam bZIP transcription factor 393 452 IPR004827 GO:0003700|GO:0006355
Lja5g3300 559 Gene3D - 392 446 - -
Lja5g3300 559 MobiDBLite consensus disorder prediction 1 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3300 Lja-Chr5 63948356 63952685 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja5g3300 bZIP_1 2.2e-09 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3300 5 63948356 63952685 Lja5g3300 5 63948356 63952685 ECH