Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3297 ATGACTACTTCTCTTCAGGTTTGGGTTATGTTTTTCCTTCTCCCCATTCTAACAGCGCCAACATTGTTGGTTGATGCTGCAGGTAAAGGGGAGTGGAAAGTTCTGCAGAAAAGCATAGGAATAGTAGCAATGCACATGCAGCTTCTCCACAACGACCGTGTCGTGATCTTTGACCGAACAGACTTCGGCCTCTCCAACCTCACCTTACCAGGCGGTCGGTGCCGCCGCAACGCGCAAGAATTGGTGGTGAAAACCGACTGCACCGCGCACTCAGTGGAATACGACGTGGCTGCCAATAAGTTCCGCGCACTATACGTCGAGACCGACGTGTGGTGCTCCTCCGGTTCGGTCACCCCTGAGGGGACCCTAGTCCAGACCGGCGGGTTCAACGACGGGGACCGGACGGTTCGGACGTACAGTCCGTGTGCTGATGCTGATTGTGACTGGAAGGAGACTGCCGGCGGGCTGGCTGAGAGGAGGTGGTATGCCAGCAACCACCAGCTGCCGGACGGGCGGCAGATAGTGGTCGGCGGGAGGAGGGCGTTTAGCTACGAGTTTAACCCGAAAGGCGATACCGGTGCGTTCAAGTTGCCGTTTCTTGGTCAGACCAATGATCCTGGGCAGGAGAATAACTTGTACCCGTTTGTTTTCCTGAATGTGGATGGGAATCTCTTCATCTTTGCCAACAACAGAGCTATCTTGCTTGACTATAAGAAGAATGCAGTGGTGAAAACTTACCCAACAATACCCGGTGGAGACCCAAGGAGTTACCCAAGCAGTGGTTCAGCAGTATTGTTACCACTGAAGAATCAAGAAGCAGAGGTTTTAATTTGTGGCGGTGCTCCAAAAGGCTCATATCTACGCGCCATAAAGAGCCAATTTGTCAACGCGTTGAACACCTGTGCCCGGATCCAAATAACCGACCCGAATCCAACATGGGCCATGGAAACCATGCCCGGAGCCAGAGTCATGGGCGACATGGTCATCCTCCCAAACGGTAACGTTTTGATCATCAACGGCGCAACTTCCGGCACCGCCGGGTGGGAATCCGGGCGCGACCCGGCTTTTAGTCCGGTTCTCTACAAACCCGATAGCCCAGCCGGGTCGAGATTCGAGGTTCAGAACCCGTCCAAAACGCCGCGAATGTACCACTCCACCGCCATTTTGCTCCGCGACGGAAGAGTCCTCGTCGCCGGTAGCAACCCCCATATCGGTTACAGCTTCGGGAACGTGGTTTTCCCGACGGAATTGAGCATGGAAGCGTTTTCTCCTTCGTATTTGGAAGCGGGTAACGCGAATCTGCGTCCGAGAGTGACTGCCCCTGCTTCTCAGAGCAAGGTCAAGTACGGTCAGAAGGTGAAGGTGCGGTTTCAGGTGAAGGCGGCGTTGGATGCTGTGTCGGTGACGATGTTGGCGCCGCCGTTTACCACGCACTCTTTCTCCATGAATCAGAGGATGTTGGTGCTGGGGACAGGGAAGGTGGGAAATGTTGGAGCAGGAACGTATGAAGTTGAGGTCACCATGCCTGGTTCCTCTGTTCTTGCACCAGCTGGTTTTTATCTACTGTTTGTGGTGCACAAAGAGATTCCCAGCGAGGGTGTTTGGATCCAGATACAGTGA 1620 0.542 MTTSLQVWVMFFLLPILTAPTLLVDAAGKGEWKVLQKSIGIVAMHMQLLHNDRVVIFDRTDFGLSNLTLPGGRCRRNAQELVVKTDCTAHSVEYDVAANKFRALYVETDVWCSSGSVTPEGTLVQTGGFNDGDRTVRTYSPCADADCDWKETAGGLAERRWYASNHQLPDGRQIVVGGRRAFSYEFNPKGDTGAFKLPFLGQTNDPGQENNLYPFVFLNVDGNLFIFANNRAILLDYKKNAVVKTYPTIPGGDPRSYPSSGSAVLLPLKNQEAEVLICGGAPKGSYLRAIKSQFVNALNTCARIQITDPNPTWAMETMPGARVMGDMVILPNGNVLIINGATSGTAGWESGRDPAFSPVLYKPDSPAGSRFEVQNPSKTPRMYHSTAILLRDGRVLVAGSNPHIGYSFGNVVFPTELSMEAFSPSYLEAGNANLRPRVTAPASQSKVKYGQKVKVRFQVKAALDAVSVTMLAPPFTTHSFSMNQRMLVLGTGKVGNVGAGTYEVEVTMPGSSVLAPAGFYLLFVVHKEIPSEGVWIQIQ* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3297 539 CDD E_set_GO_C 430 538 IPR015202 -
Lja5g3297 539 Pfam Glyoxal oxidase N-terminus 44 280 IPR009880 -
Lja5g3297 539 Pfam Galactose oxidase-like, Early set domain 435 538 IPR015202 -
Lja5g3297 539 Gene3D - 26 434 IPR037293 -
Lja5g3297 539 PANTHER OXIDASE, PUTATIVE, EXPRESSED-RELATED 23 539 - -
Lja5g3297 539 SUPERFAMILY E set domains 433 538 IPR014756 -
Lja5g3297 539 PANTHER SECRETED PROTEIN-RELATED 23 539 - -
Lja5g3297 539 SUPERFAMILY Galactose oxidase, central domain 93 428 IPR011043 -
Lja5g3297 539 Gene3D Immunoglobulins 435 539 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3297 Lja-Chr5 63934780 63937543 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3297 5 63934780 63937543 Lja5g3297 5 63934780 63937543 ECH
Lja5g3297 5 63934780 63937543 Lja1g3527 1 43965707 43967671 PCT