Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3288 ATGGCTGGGTTTTTCTCTCTAGGTAGTGGTAGTGGAAGTGGAAGAGGATCAGCTTCAGCTCAACAAAACAAAGATCATGAAGAAGAACAACAAGAAAGAGACCACACTAACAACACTCTCTTATTCAGAAACGAAGAGATCTACAACAAAGGCTTCGAGATATGGCCACAATCTTCATACCACAACCAACAAAACCTCACCAGCTACTACTCTTTTGGTGTGGGACCTAGTCGAAGGAACAACAATAACAACAACCCTTCTAGCTCGAACGTGAACAACGACGATGTTTCGGTGTCTTTCTCCGATGAGTCGACGAGGTTTGGTTTCACGGTGGTGAGACCTGGTGGCGGAGGAGGAGGGTTTGGTGGCGGAGCAAGCGGAGGAATGAACTGTCAGGACTGCGGGAACCAAGCGAAGAAAGACTGTCCTCATCTGAGATGCAGGACTTGCTGTAAGAGCCGAGGGTTTCAGTGTCAAACGCATGTTAAGAGCACTTGGGTTCCCGCTGCAAAACGCCGTGAGAGACAGCAACAACTCGCTACGTTGCAGAACCAACAACATTCAAGACGACACAGAGATGGAAATCAAGATGTTGCTGCAGGTTCTCTTGCTCCAGTACCTATCACTAGCACAGGGTTGGAGCTGGGACAATTCCCACCTGAGCTTAACTCTCCGGCGGTGTTCCGGTGCGTGAAAGTGAGCGCAATGGATGCCCAAGATGAGCGCTACGGTTATCAAACAGCCGTCAACATAGGAGGGCATGTCTTCAAGGGAATTCTCTATGATCAAGGCCAAGACAATGCTCCTAATTACACCAATGCAGGTGCTGGTGAAGGTTCCCCCGGTGGTGGTGGTGCTAGTGGTGAAGGAGCACCGCCACAAAATCTCTTAACCGCCACAACTAGTGGAAACCCTTTTGACTCTTCACTCTACCCGGCTCCACTGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCCCCAAGATCCTGA 993 0.4975 MAGFFSLGSGSGSGRGSASAQQNKDHEEEQQERDHTNNTLLFRNEEIYNKGFEIWPQSSYHNQQNLTSYYSFGVGPSRRNNNNNNPSSSNVNNDDVSVSFSDESTRFGFTVVRPGGGGGGFGGGASGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLATLQNQQHSRRHRDGNQDVAAGSLAPVPITSTGLELGQFPPELNSPAVFRCVKVSAMDAQDERYGYQTAVNIGGHVFKGILYDQGQDNAPNYTNAGAGEGSPGGGGASGEGAPPQNLLTATTSGNPFDSSLYPAPLNAFMAGTQFFPPPRS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3288 330 MobiDBLite consensus disorder prediction 1 40 - -
Lja5g3288 330 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 217 264 IPR006511 -
Lja5g3288 330 Pfam Domain of unknown function (DUF702) 128 266 - -
Lja5g3288 330 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 328 - -
Lja5g3288 330 MobiDBLite consensus disorder prediction 21 40 - -
Lja5g3288 330 MobiDBLite consensus disorder prediction 173 202 - -
Lja5g3288 330 MobiDBLite consensus disorder prediction 71 99 - -
Lja5g3288 330 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 130 172 IPR006510 -
Lja5g3288 330 MobiDBLite consensus disorder prediction 270 303 - -
Lja5g3288 330 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 328 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3288 Lja-Chr5 63370830 63373220 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lja5g3288 DUF702 4.3e-60 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3288 5 63370830 63373220 Lja5g3288 5 63370830 63373220 ECH
Lja5g3288 5 63370830 63373220 Lja1g3541 1 44094336 44095354 PCT