Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3287 ATGGATCATCGGAAACTCTTCGCTATTCTCCTCTTCGCCGCCGTGGCAACCGCCGCGGCAGCCAACCGAATCGACGCCGAGGACCATGACGACGCTCTGATTCGTCAGGTAGTGGACCACGTCCACGACGACCACTTGTTGAACGCGGAGCGCCACTTCACGACGTTCAAGGCGAAGTTCGGGAAGAGCTACGCGACGAGAGAGGAGCATGACTACCGCTTCGGCGTCTTCAAGTCTAACCTCCGGCGGGCGAAGGTGCACGCGAAGCTCGATCCCTCCGCTGAACACGGCGTCACGAAATTCTCCGATCTGACTCCGGCTGAGTTCCGCCGGCAGTTCCTCGGCGTTAAGGCTCTCCGTCTTCCTGCTGACGCTCAGAAGGCTCCCATCCTCCCGACGCGCGACCTCCCTGACGACTTCGATTGGCGCGATAAAGGTGCCGTCACTCCCGTCAAGGACCAGGGTGCGTGTGGTTCATGTTGGGCTTTCAGCGCCACTGGAGCATTGGAAGGATCTCACTATCTGACCACTGGTAAGCTAGTGAGCATTAGTGAGCAACAGCTTGTGGATTGTGATCATGTGTGTGATCCAGAAGAATATAATTCGTGTGACTCAGGCTGCAATGGTGGGTTGATGAACAATGCATTCGAGTACATACTACAGTCAGGGGGGGTGATGCGAGAAAAGGACTATCCATACACCGGAAGAGATGGCACCTGCAAATTTGACAAGAGTAAAATTGCAGCTTCTGTTGCTAATTTCAGTGTGGTTTCCCTTGATGAAGACCAAATTGCTGCAAATCTAGTGATGAATGGTCCTCTTGCAGTTGCTATAAATGCAGTGTATATGCAGACATATGTAGGTGGTGTCTCATGCCCATACATCTGTGGGAAGAATTTAGATCATGGGGTTCTTCTGGTGGGTTATGGTAAAGCCGGATACGCTCCGATTCGGTTCAAGAACAAGGCTTACTGGATCATAAAGAATTCATGGGGAGAGAGCTGGGGAGAGAATGGATATTACAAGATCTGCAGGGGTCGGAATGTATGTGGAGTGGATTCCATGGTCTCAACTGTAGCTGCTGCTCATACATCATCTAGCCATTAA 1107 0.5194 MDHRKLFAILLFAAVATAAAANRIDAEDHDDALIRQVVDHVHDDHLLNAERHFTTFKAKFGKSYATREEHDYRFGVFKSNLRRAKVHAKLDPSAEHGVTKFSDLTPAEFRRQFLGVKALRLPADAQKAPILPTRDLPDDFDWRDKGAVTPVKDQGACGSCWAFSATGALEGSHYLTTGKLVSISEQQLVDCDHVCDPEEYNSCDSGCNGGLMNNAFEYILQSGGVMREKDYPYTGRDGTCKFDKSKIAASVANFSVVSLDEDQIAANLVMNGPLAVAINAVYMQTYVGGVSCPYICGKNLDHGVLLVGYGKAGYAPIRFKNKAYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTVAAAHTSSSH* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3287 368 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 154 165 IPR000169 -
Lja5g3287 368 Pfam Papain family cysteine protease 136 358 IPR000668 GO:0006508|GO:0008234
Lja5g3287 368 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 31 361 - -
Lja5g3287 368 SMART pept_c1 136 360 IPR000668 GO:0006508|GO:0008234
Lja5g3287 368 Gene3D Cysteine proteinases 21 360 - -
Lja5g3287 368 SMART Inhibitor_I29_2 53 109 IPR013201 -
Lja5g3287 368 Pfam Cathepsin propeptide inhibitor domain (I29) 53 109 IPR013201 -
Lja5g3287 368 PANTHER CYSTEINE PROTEASE RD19C-RELATED 31 361 - -
Lja5g3287 368 SUPERFAMILY Cysteine proteinases 50 359 IPR038765 -
Lja5g3287 368 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 324 343 IPR025661 -
Lja5g3287 368 CDD Peptidase_C1A 137 359 IPR039417 -
Lja5g3287 368 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 300 310 IPR025660 -
Lja5g3287 368 PRINTS Papain cysteine protease (C1) family signature 154 169 IPR000668 GO:0006508|GO:0008234
Lja5g3287 368 PRINTS Papain cysteine protease (C1) family signature 302 312 IPR000668 GO:0006508|GO:0008234
Lja5g3287 368 PRINTS Papain cysteine protease (C1) family signature 324 330 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3287 Lja-Chr5 63339915 63343437 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3287 5 63339915 63343437 Lja5g3287 5 63339915 63343437 ECH
Lja5g3287 5 63339915 63343437 Lja1g3544 1 44116851 44119207 PCT