Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3285 ATGGCTGATTTAGGTGGTGGCTCAGCCTCTTCCAAGAGAATATGGTGCTCTGTCCCTGAAAAACTCCAGCTCCATGGGGCAATGCTGGCCTTGCAGTTCGGCTATGCAGGGTTCCATGTGGTCTCAAGAGCTGCACTTAACATGGGTGTTAGCAAACTTGTTTTCCCTGTCTATAGGAACATCATTGCTCTGCTTCTTCTCCTTCCCTTTGCCTACTTCTTGGAAAAGAAGGAGAGGCCAGCGATTACTTTGAACTTCCTCGTGCAGTTCTTTTTTCTGGCACTTGTGGGGATTACAGCAAACCAAGCTTTCTACTTGCTTGGCTTGGACAACACATCGCCTACCTTCGCATCAGCAATACAGAACTCTGTCCCTGCCATTACATTTCTCATGGCAGCCATATTAAGGATAGAGCAAGTGCGGCTGAATAGAAAAGATGGAATTGCTAAGATAGCAGGAACAGTGTTTTGTGTTGTGGGAGCAAGTGTGATCACGCTTTACAAAGGTCCAACCATCTATAATCCATCACCAGCAGTTCCTCATGTAAATAGCAGTAGCATAACAGCGCCAGTAATTGAGGAGTCTTGGTCATTTTCATCACTGGGAGATGCAAATGGCAAGAACTGGACCCTTGGCTGCGTCTACCTCATCGGGCATTGCTTGTCTTGGTCTGCTTGGCTCGTGCTGCAAGCACCCGTCCTCAAGAAGTACCCGGCTCGCCTCTCCGTCACTTCCTACACTTGTTTCTTTGGGCTCTTGCAGTTTCTAGTCATTGCTTTGGTCGCCGAGAGAGATGCGCAAGCTTGGCTTTTCCACTCCGGTGGAGAAGCCTTCACAATCGTATATGCGGGAGTGGTGGCATCTGGAATTGCCTTTGCCGTACAGATATGGTGCATTGACAGAGGAGGCCCAGTGTTCGTGGCGGTGTATCAGCCTGTTCAGACCTTTGTTGTTGCCATTATGGCTTCCATTGCTTTAGGAGAAGAGTTCTACTTGGGCGGGATCATTGGGGCAGTGTTGATTGTAGTGGGACTTTACCTTGTCCTGTGGGGTAAAAGTGAAGAGAAGAAGATTATAAAAGAACAACTTGCTATTACATCCACTGCAGAACACAGTATCATTAGGCCTGGAAGCCAAGCCAGAGCATCAATTAATCAGCCACTCCTCTCTTCATCAATAACAGAGCATGTTTGA 1194 0.4774 MADLGGGSASSKRIWCSVPEKLQLHGAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIALLLLLPFAYFLEKKERPAITLNFLVQFFFLALVGITANQAFYLLGLDNTSPTFASAIQNSVPAITFLMAAILRIEQVRLNRKDGIAKIAGTVFCVVGASVITLYKGPTIYNPSPAVPHVNSSSITAPVIEESWSFSSLGDANGKNWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSYTCFFGLLQFLVIALVAERDAQAWLFHSGGEAFTIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAIMASIALGEEFYLGGIIGAVLIVVGLYLVLWGKSEEKKIIKEQLAITSTAEHSIIRPGSQARASINQPLLSSSITEHV* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3285 397 Pfam EamA-like transporter family 29 165 IPR000620 GO:0016020|GO:0016021
Lja5g3285 397 Pfam EamA-like transporter family 211 349 IPR000620 GO:0016020|GO:0016021
Lja5g3285 397 PANTHER WAT1-RELATED PROTEIN 16 362 IPR030184 GO:0016021|GO:0022857
Lja5g3285 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 255 353 - -
Lja5g3285 397 PANTHER WAT1-RELATED PROTEIN 16 362 - -
Lja5g3285 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 58 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3285 Lja-Chr5 63303946 63308949 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3285 5 63303946 63308949 Lja5g3285 5 63303946 63308949 ECH
Lja5g3285 5 63303946 63308949 Lja1g3546 1 44141697 44145866 PCT