Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3284 ATGATGAAATCAGGCATGGGAATTGAAGAGAGAAAGCAGCTGAAGAGGCCAGCGCAGGCCAGTTCCAGAAAGGGTTGCATGAGAGGGAAAGGAGGTCCTGAGAACGCGAGCTGCACCTACAAAGGCGTGAGACAGAGAACTTGGGGGAAGTGGGTTGCTGAAATCCGTGAGCCCAACCGCGGTGCTAGGCTCTGGCTTGGGACATTTGAGACCTCCCATGAAGCTGCCTTAGCTTATGATGCAGCCGCGCGTAAGCTTTACGGCTCTGAAGCCAAGCTCAATCTCCCAGAGCTCTCTGTGCCCGCTGCAAATTCTCATCATCAATCTGTACCTGACACCACCATCACCACCGCCCCCGCCAACAACCAGGTTGTTGTTCCTCAAATGCATCAACAACAACCTCAAATTCATCAAAACTTTGATGATGCCGCTGTTACAAGTGTCCTCACATCTTCTGATTTCAGCAGCAACATGATGATGAACAACCCTGCTATCTCCATGCCTTCTCATCATCATCATCAGCATGTTGTTGGTGATGGATCAATGTATAGCAGTGACTCAGTGGTGCCTCTTCTTCCATTGGAGACCAACAACAACACTAATGCAGCAGCAATGGACACTACTGATGACATGTTCCGTTCGTTTTTCGGGACAGTGAACAACGAGACCATGCCACCCGTGTTTGATGATTCCATTTGGGCAGAAGCTGCCATGTCTCTTGATTTTCCTGTGGTTGCAGATGATGGAATTTACACAGCTTCTGGAAACTTCGGAGAAGTGGGTGTTTGGGATACGCTGCAAACACCATGGTGCATGTAA 819 0.4933 MMKSGMGIEERKQLKRPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSEAKLNLPELSVPAANSHHQSVPDTTITTAPANNQVVVPQMHQQQPQIHQNFDDAAVTSVLTSSDFSSNMMMNNPAISMPSHHHHQHVVGDGSMYSSDSVVPLLPLETNNNTNAAAMDTTDDMFRSFFGTVNNETMPPVFDDSIWAEAAMSLDFPVVADDGIYTASGNFGEVGVWDTLQTPWCM* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3284 272 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Lja5g3284 272 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Lja5g3284 272 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Lja5g3284 272 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Lja5g3284 272 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 14 254 - -
Lja5g3284 272 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Lja5g3284 272 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 254 - -
Lja5g3284 272 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Lja5g3284 272 MobiDBLite consensus disorder prediction 1 38 - -
Lja5g3284 272 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Lja5g3284 272 MobiDBLite consensus disorder prediction 1 17 - -
Lja5g3284 272 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3284 Lja-Chr5 63293477 63294787 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja5g3284 AP2 9e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3284 5 63293477 63294787 Lja5g3284 5 63293477 63294787 ECH
Lja5g3284 5 63293477 63294787 Lja1g3551 1 44235244 44238182 PCT