Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3279 ATGTATCCGAATCAAGCCTTTTCTTCCGGATCCTATGCGGAAATGTTGTCTGGGAGTTCTATGTTGCCTCATAACTACAGTGAATCTGTTGGAGGACAAAATGAGTTGAAGTTCATGGCATCCATGGGTGATAATATGACAATTCAGCCTATGGAAGAGCATTCTAATGCTGGTGCTGGAGATTCGCATGTTATTTCAAGGACACAATTGGGTCTTGTAGACATTGAGCAGCAAAATGTGCAGGGCCAGGGCTTGTCTCTTAGCCTTGGGACTGTGATGCAATCTGTCCCTTCCTTTCAGTATCAGTATCCCGGTTCCGGTTTCACATCACTAATGAGTTCTCAAATTCCAAACTTAAAGGGGACTGAAGATGAGGCCAACCTACATAAGGAACTGAGAAATGCTGAATGCATGACACCTGTATCTTCTGGAGGCTTTCACAAAAGGGAAGATTTCTATAATCCACACCAGTCTGATCCATACCTTCACGGAGCAGCGGGTTTCTCCGCCAACAATGTCATGAACTCGCAATACCTTAAGGTAGCACAGGAGTTGCTTGATGAAATAGTTAATGTCCGAAAGCCTTTGAAGCCGACTGGATTGGAAAAACAGCAAAGCTTTCGCGACATTGGTTTGGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGTCAATCTATGCAAATGTCTTCGGGCCCCAATGGTTCTACTGCAAACTCTTCATGTGAGCTATCACCTGCCGAACGACAGCATCTGTTGGACAAGAAGACAAAACTTTTGTCCATGTTGGATGAGGTAGACAAAAGATACCGACAGTACTGCCATCAGATGCAGATTGTGGTATCGTCTTTCGATATGGTATCTGGGTGCGGAGCGGCGGAACCATACACCGCACTAGCCTTGCGCACAATTTCTCGTCATTTTCGCTGTTTGCGTGATGCTATCAGCGGCCAGATACAAGTGACTCAAAGGAGCCTTGGAGAACAGGAGGGAATACCCCGTCTTCGCAATGTGGATCAGAAGCTCAGACAACAAAAGGCCCTTCAGCAACTTGGTGTCATGCGACAAGCTTGGAGACCTCAAAGGGGACTTCCCGAAAACTCTGTTTCCATACTCCGTGCATGGCTGTTTGAGCATTTCCTCAACCCTTATCCAAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTAAGCAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAATTTGGTGATTCTGAGATGAGCAGCAGCAACCTTTTATCAGAAAACACACCCAAAGCTTCAAGAGAGGATGTTCAAGTGTCTGGCAATAAAAGGGAAGAGTCTCAGGACAAGTTAACAACTATTGATAGTCTTCAACAACAGGGCCAGATTCATGGGTTGAAATTGGATCATGCTTCTTCCACTGCAGAATTGGATAGAGGGATCCAAAGTGGTGATGATCATGGGACAAATGTCATGGATTTTAGAACTGGTAAATTGCACGGTGATCAAAGGTTTAACATGAACAATAGCCCCTATTCAAGTGCACCTATGCAAATCACCCACAATGGTGATGGCTGCATAATGGCTTCTACTCCTGCAACATATGATTTAGCTGATTTGGGTAACTTTTCAACTGTGGGTGGTCATGTTTCCCTTGCATTGGAGTTGAGGAACTCTGAAAATAATGGATTTGGAGTGTCCAATGATGACACATATAAAAGACATGATCAAACATTGGCTTCTTCACAAGAGAATGATATGCTAGAGTATCATTTCACAGACTCTGGAAAGCAACAACACAAGTTTGGCAATCCTCATCTGCTACACGAGTTCGTTGTCTGA 1884 0.4416 MYPNQAFSSGSYAEMLSGSSMLPHNYSESVGGQNELKFMASMGDNMTIQPMEEHSNAGAGDSHVISRTQLGLVDIEQQNVQGQGLSLSLGTVMQSVPSFQYQYPGSGFTSLMSSQIPNLKGTEDEANLHKELRNAECMTPVSSGGFHKREDFYNPHQSDPYLHGAAGFSANNVMNSQYLKVAQELLDEIVNVRKPLKPTGLEKQQSFRDIGLDGSKDSDGKSTSQSMQMSSGPNGSTANSSCELSPAERQHLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVSGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRNVDQKLRQQKALQQLGVMRQAWRPQRGLPENSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLSRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSSSNLLSENTPKASREDVQVSGNKREESQDKLTTIDSLQQQGQIHGLKLDHASSTAELDRGIQSGDDHGTNVMDFRTGKLHGDQRFNMNNSPYSSAPMQITHNGDGCIMASTPATYDLADLGNFSTVGGHVSLALELRNSENNGFGVSNDDTYKRHDQTLASSQENDMLEYHFTDSGKQQHKFGNPHLLHEFVV* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3279 627 MobiDBLite consensus disorder prediction 200 245 - -
Lja5g3279 627 MobiDBLite consensus disorder prediction 217 245 - -
Lja5g3279 627 MobiDBLite consensus disorder prediction 427 464 - -
Lja5g3279 627 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 590 - -
Lja5g3279 627 ProSiteProfiles 'Homeobox' domain profile. 355 418 IPR001356 GO:0003677
Lja5g3279 627 CDD homeodomain 358 419 IPR001356 GO:0003677
Lja5g3279 627 Pfam Associated with HOX 173 316 IPR006563 -
Lja5g3279 627 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 28 590 - -
Lja5g3279 627 SMART HOX_1 358 422 IPR001356 GO:0003677
Lja5g3279 627 Gene3D - 355 433 - -
Lja5g3279 627 SUPERFAMILY Homeodomain-like 359 425 IPR009057 -
Lja5g3279 627 SMART prehox3 166 317 IPR006563 -
Lja5g3279 627 Pfam Homeobox KN domain 375 414 IPR008422 GO:0003677|GO:0006355
Lja5g3279 627 MobiDBLite consensus disorder prediction 430 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3279 Lja-Chr5 63237620 63242309 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lja5g3279 POX 6.7e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3279 5 63237620 63242309 Lja5g3279 5 63237620 63242309 ECH