Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3278 ATGAGCTTATGCCCGTACGGTTCCGTCATTCAACCACCGCCACTAACTCAACAACAACAACACCGCCACTATCCAATCCCTCTTCTTCGCCATCCTTTACTATGCCGCTCAACCCCTCTCTTTCTCACTCCCAATCACACCCTCATCTCCTCCACCACAACCACCACCACCTCCGTTCTGCACCGCGACCTCGGAGCTGAACTCGCCGCCCCTGACTCCAACGACGCCGTTTCAAACCCCGCAACTGAGTTGCTGGACGCACCACCGCAGCAGCAAAATGAAGAAGAAGAACCAGCTCCGCAACCGCAAGTAACGAGGTTCAGAAAGAAGAAAGAAGAACAGCAAGACAACGGAGACACCTTCGATAACCGTTACAAGCTCCGTAATGGAAGGGAGGTTTTGGAAGAGAAAGCGTACCTTGTCGGCGTTGAGTGGAAGGGTGATGATGTTGAGGACTCTTTTGGTGTGCAAGAATCTCTGAGTGAATTGGCACAGTTAGCTGACACTGCTGGATTGTTGGTTGTTGGCTCTACTCACCAGAAGCTTGCTTCTCCAAACCCTAGGACGTACATTGGCTCCGGCAAGGTTTCTGAAATTAAGAGTGCAATTCATGGGTTGGATGTTGAAACTGTAATCTTTGATGATGAGTTGTCAGCTGGGCAATTGCGCAACTTGGAAAAGATTTTTGGTGGAGATGTGAGAGTTTGTGATCGAACTGCTCTTATCCTTGATATATTCAATCAGCGAGCAGCCACACATGAAGCATCTTTACAGGTTTCATTAGCACAAATGGAATACCAACTTCCTCGTCTAACAAAAATGTGGACTCATCTTGAGCGTCAAGCAGGAGGAAAGGTCAAGGGTATGGGTGAAAAACAAATTGAAGTGGACAAACGTATTTTGCGTAACCAAATTGGTGTTCTCAAGAAAGAACTAGAATCCGTCAGGAAACATCGAAAGCAGTACCGTAACAGGCGTTTTTCAATTCCTGTGCCAGTGGTATCCTTGGTTGGTTACACAAATGCTGGTAAGAGTACGCTTTTGAATCAATTAACTGGAGCAGATGTTCTTGCCGAGGATAAATTATTTGCAACTTTAGATCCAACTACGAGGAGGGTACAGATGAAGAATGGAAAGGAGTTTCTCCTAACAGACACTGTTGGTTTTATTCAGAAGTTGCCTACAACACTAGTTGCTGCCTTCAGAGCTACGCTGGAGGAGATATCAGAGTCATCACTTTTGGTGCATGTGGTTGATATCAGTCACCCCCTGGCTGAGCAACAGATAAATGCTGTGGACAAAGTTCTCTCAGAACTAGATGTATCACCAATTCCAAGATTGATGGTCTGGAACAAGGTTGATAAGGCTAGTGATCCTCAGAAAATCAGACTTGATGCTGAAAAAAGAGAAGATGTTATATGCATATCTGCTCTAACTGGCGAAGGGTTACAAGAATTCTGTAATGCAGTTCAAGACAAACTAAAGGACTCCATGGTATGGGTAGAGGCTTTGTTACCATTTGAAAATGGGGACCTTCTCAGCACCATACACCAGGTTGGAATGGTTGAGAAAACTGAATATACAGAGCAAGGGACATATATCAAAGCTCATGTGCCCCTACGTTTTGCAAGATTGCTTACACCCATGAGGCAAATGTGTGTATCACGACCTTAA 1674 0.4534 MSLCPYGSVIQPPPLTQQQQHRHYPIPLLRHPLLCRSTPLFLTPNHTLISSTTTTTTSVLHRDLGAELAAPDSNDAVSNPATELLDAPPQQQNEEEEPAPQPQVTRFRKKKEEQQDNGDTFDNRYKLRNGREVLEEKAYLVGVEWKGDDVEDSFGVQESLSELAQLADTAGLLVVGSTHQKLASPNPRTYIGSGKVSEIKSAIHGLDVETVIFDDELSAGQLRNLEKIFGGDVRVCDRTALILDIFNQRAATHEASLQVSLAQMEYQLPRLTKMWTHLERQAGGKVKGMGEKQIEVDKRILRNQIGVLKKELESVRKHRKQYRNRRFSIPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQINAVDKVLSELDVSPIPRLMVWNKVDKASDPQKIRLDAEKREDVICISALTGEGLQEFCNAVQDKLKDSMVWVEALLPFENGDLLSTIHQVGMVEKTEYTEQGTYIKAHVPLRFARLLTPMRQMCVSRP* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3278 557 Pfam GTP-binding GTPase Middle Region 249 326 IPR032305 -
Lja5g3278 557 PANTHER GTP-BINDING PROTEIN HFLX 103 542 IPR016496 GO:0005525
Lja5g3278 557 Pfam HflX C-terminal domain 465 532 IPR045498 -
Lja5g3278 557 Gene3D - 331 499 IPR027417 -
Lja5g3278 557 MobiDBLite consensus disorder prediction 70 124 - -
Lja5g3278 557 Gene3D - 152 249 IPR042108 -
Lja5g3278 557 Gene3D - 250 317 - -
Lja5g3278 557 MobiDBLite consensus disorder prediction 75 99 - -
Lja5g3278 557 CDD HflX 291 494 IPR030394 GO:0005525
Lja5g3278 557 TIGRFAM GTP_HflX: GTP-binding protein HflX 138 493 IPR016496 GO:0005525
Lja5g3278 557 Hamap GTPase HflX [hflX]. 160 523 IPR016496 GO:0005525
Lja5g3278 557 PRINTS GTP1/OBG GTP-binding protein family signature 401 419 IPR006073 GO:0005525
Lja5g3278 557 PRINTS GTP1/OBG GTP-binding protein family signature 334 354 IPR006073 GO:0005525
Lja5g3278 557 PANTHER GTP-BINDING PROTEIN 6-RELATED 103 542 - -
Lja5g3278 557 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 332 498 IPR030394 GO:0005525
Lja5g3278 557 MobiDBLite consensus disorder prediction 101 124 - -
Lja5g3278 557 Pfam 50S ribosome-binding GTPase 334 452 IPR006073 GO:0005525
Lja5g3278 557 Pfam GTP-binding GTPase N-terminal 158 246 IPR025121 -
Lja5g3278 557 Coils Coil 305 325 - -
Lja5g3278 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 505 IPR027417 -
Lja5g3278 557 TIGRFAM small_GTP: small GTP-binding protein domain 333 489 IPR005225 GO:0005525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3278 5 63230601 63236811 Lja5g3278 5 63230601 63236811 ECH